{"id":39945401,"url":"https://github.com/daavid00/ad-micp","last_synced_at":"2026-01-18T19:47:35.960Z","repository":{"id":47335426,"uuid":"323628034","full_name":"daavid00/ad-micp","owner":"daavid00","description":"Simulator programs and utilities for microbially induced calcite precipitation.","archived":false,"fork":false,"pushed_at":"2025-11-26T21:07:28.000Z","size":5369,"stargazers_count":10,"open_issues_count":0,"forks_count":3,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-11-29T13:33:33.562Z","etag":null,"topics":["ccs","micp","mrst","octave"],"latest_commit_sha":null,"homepage":"","language":"MATLAB","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/daavid00.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.txt","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2020-12-22T13:04:45.000Z","updated_at":"2025-11-26T21:06:54.000Z","dependencies_parsed_at":"2024-12-06T15:42:21.765Z","dependency_job_id":null,"html_url":"https://github.com/daavid00/ad-micp","commit_stats":null,"previous_names":[],"tags_count":7,"template":false,"template_full_name":null,"purl":"pkg:github/daavid00/ad-micp","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daavid00%2Fad-micp","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daavid00%2Fad-micp/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daavid00%2Fad-micp/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daavid00%2Fad-micp/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daavid00","download_url":"https://codeload.github.com/daavid00/ad-micp/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daavid00%2Fad-micp/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28549722,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-18T19:22:41.102Z","status":"ssl_error","status_checked_at":"2026-01-18T19:22:26.310Z","response_time":98,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["ccs","micp","mrst","octave"],"created_at":"2026-01-18T19:47:35.190Z","updated_at":"2026-01-18T19:47:35.954Z","avatar_url":"https://github.com/daavid00.png","language":"MATLAB","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Build Status](https://github.com/daavid00/ad-micp/actions/workflows/CI.yml/badge.svg)](https://github.com/daavid00/ad-micp/actions/workflows/CI.yml)[![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)\n\n# ad-micp: A module to study CO2 leakage remediation by microbially induced calcite precipitation (MICP)\n\n\u003cimg src=\"micp-gif.gif\" width=\"830\" height=\"400\"\u003e\n\n## Description\nMICP is a new and sustainable technology which utilizes biochemical\nprocesses to create barriers by calcium carbonate cementation; therefore,\nthis technology has a potential to be used for sealing leakage zones in\ngeological formations. We have implemented a mathematical model for MICP\nsuitable for field-scale studies. Further information on the mathematical\nmodel can be found in the two publications [A, B] in the \"Cite\" part of\nthis README.\n\nThe numerical examples accompanying this module are:\n* runMICP1DCase.m and\n* runMICP3DCase.m.\n\nIn addition, this module includes scripts to run the studies in [A, B], see the [_publications folder_](https://github.com/daavid00/ad-micp/tree/main/publications).\n\nThe ad-micp module is compatible with the (freely available) MATLAB\nReservoir Simulation Toolbox (MRST) provided by SINTEF Digital, see\nhttp://www.sintef.no/projectweb/mrst/.\n\nSee the [_Wiki_](https://github.com/daavid00/ad-micp/wiki) for an extended description, information regarding changes\nrespect to previous releases, and using this module in macOS with GNU Octave.\n\n## Requirements\n* MRST (Tested version: mrst-2025b)\n* MATLAB (Tested version: R2025b) or GNU Octave (Tested version: 10.3.0)\n\n## Installation (MATLAB/GNU Octave)\nThe ad-micp module is included in MRST, click [_this link_](https://github.com/SINTEF-AppliedCompSci/MRST/tree/main/modules/ad-micp) \nto see the version of ad-micp included.\n\nIf you are interested in using the ad-micp module from the edge version, this can be achieved by the following steps:\n\n```bash\n# Clone MRST\ngit clone https://github.com/SINTEF-AppliedCompSci/MRST.git\n# Get inside the modules folder\ncd MRST/modules\n# Remove the ad-micp folder from the MRST folder\nrm -rf ad-micp\n# Clone the ad-micp repo\ngit clone https://github.com/daavid00/ad-micp.git\n# Get inside the ad-micp folder\ncd ad-micp\n``` \n\nThen you can try to run the [_test_runMICP1DCase.m_](https://github.com/daavid00/ad-micp/blob/main/tests/test_runMICP1DCase.m) using octave (octave can be installed by executing `brew install octave`):\n\n```bash\noctave tests/test_runMICP1DCase.m\n```\n\n## Getting started\nSee https://www.youtube.com/watch?v=nvz3bV4QgxM.\n\n## Cite\nIf you use ad-micp to write a scientific publication, please cite one of\nthe following papers:\n* [A] Landa-Marbán, D., Tveit, S., Kumar, K., Gasda, S.E., 2021.\nPractical approaches to study microbially induced calcite precipitation\nat the field scale. Int. J. Greenh. Gas Control 106, 103256.\nhttps://doi.org/10.1016/j.ijggc.2021.103256.\n* [B] Landa-Marbán, D., Kumar, K., Tveit, S., Gasda, S.E.\nNumerical studies of CO2 leakage remediation by micp-based plugging\ntechnology. In: Røkke, N.A. and Knuutila, H.K. (Eds) Short Papers from the\n11th International Trondheim CCS conference, ISBN: 978-82-536-1714-5,\n284-290.\n\n## Related\nBelow are some tools that might be of interest; check ‘em out 🙂.\n\n* py-micp: An open-source simulation workflow for field-scale application of microbially induced calcite precipitation technology for leakage remediation (https://github.com/daavid00/py-micp).\n* pyopmspe11: A Python framework using OPM Flow for the CSP SPE11 benchmark project (https://github.com/OPM/pyopmspe11).\n* pycopm: An open-source tool to tailor OPM Flow geological models (https://github.com/cssr-tools/pycopm).\n* plopm: Quick generation of PNGs, GIFs, and VTKs from a OPM Flow type model (https://github.com/cssr-tools/plopm).\n* pofff: An open-source image-based history-matching framework for the FluidFlower benchmark study using OPM Flow (https://github.com/cssr-tools/pofff).\n* pyopmnearwell: A Python framework to simulate near well dynamics using OPM Flow (https://github.com/cssr-tools/pyopmnearwell).\n* expreccs: A Python framework using OPM Flow to simulate regional and site reservoirs for CO2 storage (https://github.com/cssr-tools/expreccs).\n* pymm: An open-source image-based framework for CFD in microsystems (https://github.com/cssr-tools/pymm).\n\n## Contact\nDavid Landa-Marbán (dmar@norceresearch.no).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdaavid00%2Fad-micp","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdaavid00%2Fad-micp","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdaavid00%2Fad-micp/lists"}