{"id":21686480,"url":"https://github.com/danlooo/coabundance","last_synced_at":"2025-03-20T12:17:39.172Z","repository":{"id":89615434,"uuid":"322286656","full_name":"danlooo/coabundance","owner":"danlooo","description":"Wrapper around several methods to assess co-abundant taxa in microbial datasets.","archived":false,"fork":false,"pushed_at":"2021-01-12T09:45:20.000Z","size":217,"stargazers_count":0,"open_issues_count":1,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-01-25T12:25:05.595Z","etag":null,"topics":["correlation","metagenomics"],"latest_commit_sha":null,"homepage":"https://danlooo.github.io/coabundance","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-2-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/danlooo.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-12-17T12:21:40.000Z","updated_at":"2021-01-12T09:40:52.000Z","dependencies_parsed_at":null,"dependency_job_id":"833e1a37-e9c8-4c7a-a35f-28538b4c46da","html_url":"https://github.com/danlooo/coabundance","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danlooo%2Fcoabundance","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danlooo%2Fcoabundance/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danlooo%2Fcoabundance/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danlooo%2Fcoabundance/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/danlooo","download_url":"https://codeload.github.com/danlooo/coabundance/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":244609458,"owners_count":20480782,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["correlation","metagenomics"],"created_at":"2024-11-25T16:29:57.002Z","updated_at":"2025-03-20T12:17:39.137Z","avatar_url":"https://github.com/danlooo.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003cimg src=\"man/figures/logo.png\" align=\"right\" height=\"200\" /\u003e\n\n# coabundance\n\n\u003c!-- badges: start --\u003e\n[![R-CMD-check](https://github.com/danlooo/coabundance/workflows/R-CMD-check/badge.svg)](https://github.com/danlooo/coabundance/actions)\n\u003c!-- badges: end --\u003e\n\nWrapper arround several methods to asses co-abundant taxa in microbial datasets.\n\n## Installation\n\nYou can install the released version of coabundance from [CRAN](https://CRAN.R-project.org) with:\n\n``` r\ndevtools::install_github(\"danlooo/coabundance\")\n```\n\n## Get Started\n\n```r\nlibrary(coabundance)\ndata(\"abundances1\", package = \"coabundance\")\n\ncoabundance1 \u003c- correlate(abundances1)\n```\n\n\n## Websites\n\n[https://danlooo.github.io/coabundance/](https://danlooo.github.io/coabundance/)\n\n# coabundance\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdanlooo%2Fcoabundance","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdanlooo%2Fcoabundance","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdanlooo%2Fcoabundance/lists"}