{"id":21686475,"url":"https://github.com/danlooo/cpfp","last_synced_at":"2025-07-07T00:33:34.151Z","repository":{"id":25870578,"uuid":"29310663","full_name":"danlooo/cpfp","owner":"danlooo","description":"Comparative protein function prediction - a Java toolkit to deal with DSSP data","archived":false,"fork":false,"pushed_at":"2015-01-23T21:47:56.000Z","size":1116,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-03-20T12:17:34.997Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/danlooo.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-01-15T18:08:03.000Z","updated_at":"2015-02-08T01:12:25.000Z","dependencies_parsed_at":"2022-08-24T14:16:05.862Z","dependency_job_id":null,"html_url":"https://github.com/danlooo/cpfp","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/danlooo/cpfp","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danlooo%2Fcpfp","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danlooo%2Fcpfp/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danlooo%2Fcpfp/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danlooo%2Fcpfp/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/danlooo","download_url":"https://codeload.github.com/danlooo/cpfp/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danlooo%2Fcpfp/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":259584707,"owners_count":22880187,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-25T16:29:56.814Z","updated_at":"2025-06-13T05:03:07.160Z","avatar_url":"https://github.com/danlooo.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"# CPFP\nComparative protein function prediction - a java toolkit to deal with [DSSP](http://swift.cmbi.ru.nl/gv/dssp/) data\n\n\nThere are thousands of protein structures in the [Protein Data Bank](http://www.rcsb.org/pdb/home/home.do). The [DSSP-Server](http://swift.cmbi.ru.nl/gv/dssp/) provides secondary structure information about the protein backbone of each chain in the PDB. This algorithm assigns one of the seven structure elements to each amino acid.\nThese structure elements are:\n* H = \u0026#945;-helix\n* B = residue in isolated \u0026#946;-bridge\n* E = extended strand, participates in \u0026#946; ladder\n* G = 3-helix (310 helix)\n* I = 5 helix (\u0026#960;-helix)\n* T = hydrogen bonded turn\n* S = bend\n\nThis project aims to access these structure information via a java toolkit.\n\n# Tutorial\n[Sample Code](https://github.com/Eubel/cpfp/wiki/Samples)\n\n# External code\nWe used these third party classes in our project:\n* [lambdaj](https://code.google.com/p/lambdaj/) for selecting items in lists\n* [DoubleFormatUtil](http://svn.apache.org/viewvc/xmlgraphics/commons/trunk/src/java/org/apache/xmlgraphics/util/DoubleFormatUtil.java?revision=1346428\u0026view=co) for rapid double to string conversion\n\n# Authors\n* Loos D\n* Vogt F\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdanlooo%2Fcpfp","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdanlooo%2Fcpfp","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdanlooo%2Fcpfp/lists"}