{"id":32005880,"url":"https://github.com/danstich/hudson-shad-historical","last_synced_at":"2026-07-13T09:32:02.465Z","repository":{"id":270744783,"uuid":"911332651","full_name":"danStich/hudson-shad-historical","owner":"danStich","description":"Simulated population response of Hudson River American shad to historical changes in habitat","archived":false,"fork":false,"pushed_at":"2025-01-31T21:37:27.000Z","size":35277,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-10-16T15:06:20.151Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"cc0-1.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/danStich.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2025-01-02T19:10:34.000Z","updated_at":"2025-01-31T21:37:32.000Z","dependencies_parsed_at":"2025-09-11T08:37:06.016Z","dependency_job_id":"cb072ec9-9169-46a5-91c1-bf05858e23bd","html_url":"https://github.com/danStich/hudson-shad-historical","commit_stats":null,"previous_names":["danstich/hudson-shad-historical"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/danStich/hudson-shad-historical","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danStich%2Fhudson-shad-historical","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danStich%2Fhudson-shad-historical/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danStich%2Fhudson-shad-historical/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danStich%2Fhudson-shad-historical/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/danStich","download_url":"https://codeload.github.com/danStich/hudson-shad-historical/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danStich%2Fhudson-shad-historical/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":35418222,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-07-13T02:00:06.543Z","response_time":119,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-10-15T18:52:53.450Z","updated_at":"2026-07-13T09:32:02.460Z","avatar_url":"https://github.com/danStich.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# hudson-shad-historical\nSimulated population response of Hudson River American shad to historical changes in habitat\n\n## Overview\nThis repository contains simulation and plotting code, and results for an analysis of historical, longitudinal, and latitudinal changes in simulated American shad (*Alosa sapidissima*) population abundance in the Hudson River, NY, USA. The code are preliminary and under development as part of an ongoing study.\n\n## Files and Directories\n`hudson-river-hrf-parallel-sequential-dam-removal.R` is a simulation script for R that runs the analysis for our research project. It relies on parallel processing with the `snowfall` package to speed up simulations that are run using the `anadrofish` R package, version 2.1.0. Installation instructions and examples for the latter are available here: [https://github.com/danStich/anadrofish](https://github.com/danStich/anadrofish). \n\n`plots.R` contains code for compiling the simulation results and creating a plot.\n\n`results/` folder contains the simulation output in `.rda` files and the exported figure for our study.\n\n## Funding\nThis project was supported through a grant from the Hudson River Foundation to the Research Foundations for SUNY Oneonta and CUNY Queens.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdanstich%2Fhudson-shad-historical","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdanstich%2Fhudson-shad-historical","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdanstich%2Fhudson-shad-historical/lists"}