{"id":23907671,"url":"https://github.com/danymukesha/bioga","last_synced_at":"2025-09-18T23:36:03.822Z","repository":{"id":222012489,"uuid":"755767329","full_name":"danymukesha/BioGA","owner":"danymukesha","description":"Apply multi-objective genetic algorithms to genomic data for biologically informed feature selection and pattern discovery.","archived":false,"fork":false,"pushed_at":"2025-07-09T21:18:35.000Z","size":13714,"stargazers_count":0,"open_issues_count":5,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-09-08T10:58:15.796Z","etag":null,"topics":["data-analysis","gene-expression","genetic-algorithms","genomics","optimization-algorithms"],"latest_commit_sha":null,"homepage":"https://danymukesha.github.io/BioGA/","language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/danymukesha.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2024-02-11T01:29:38.000Z","updated_at":"2025-09-01T08:14:32.000Z","dependencies_parsed_at":"2024-02-11T20:09:38.833Z","dependency_job_id":"7ef7d58a-1296-4f3a-bd04-2bbd3fb1af69","html_url":"https://github.com/danymukesha/BioGA","commit_stats":null,"previous_names":["danymukesha/bioga"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/danymukesha/BioGA","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danymukesha%2FBioGA","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danymukesha%2FBioGA/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danymukesha%2FBioGA/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danymukesha%2FBioGA/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/danymukesha","download_url":"https://codeload.github.com/danymukesha/BioGA/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/danymukesha%2FBioGA/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":275852425,"owners_count":25540137,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-18T02:00:09.552Z","response_time":77,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["data-analysis","gene-expression","genetic-algorithms","genomics","optimization-algorithms"],"created_at":"2025-01-05T03:14:00.791Z","updated_at":"2025-09-18T23:36:03.769Z","avatar_url":"https://github.com/danymukesha.png","language":"C++","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\r\noutput: github_document\r\n---\r\n\r\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\r\n\r\n```{r, include = FALSE}\r\nknitr::opts_chunk$set(\r\n    collapse = TRUE,\r\n    comment = \"#\u003e\",\r\n    fig.path = \"man/figures/README-\",\r\n    out.width = \"100%\"\r\n)\r\n\r\nlibrary(BiocStyle)\r\n```\r\n\r\n\u003c!-- badges: start --\u003e\r\n  [![R-CMD-check](https://github.com/danymukesha/BioGA/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/danymukesha/BioGA/actions/workflows/R-CMD-check.yaml)\r\n  [![](https://img.shields.io/badge/devel%20version-0.99.6-blue.svg)](https://github.com/danymukesha/BioGA)\r\n  [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.15801072.svg)](https://doi.org/10.5281/zenodo.15801072)\r\n  \u003c!-- badges: end --\u003e\r\n  \r\n# BioGA \u003ca href=\"https://danymukesha.github.io/BioGA/\"\u003e\u003cimg src=\"man/figures/logo.png\" align=\"right\" height=\"139\" alt=\"BioGA website\" /\u003e\u003c/a\u003e\r\n\r\n`r Biocpkg(\"BioGA\")` package provides a set of functions for genetic algorithm \r\noptimization adapted for analyzing high throughput genomic data. \r\nThese functions are implemented in C++ for improved speed and efficiency, \r\nwith an easy-to-use interface for use within R.\r\n\r\n## Installation\r\n\r\nTo install this package, start R (preferably version \"4.4\") and enter:\r\n\r\n```{r installation , eval=FALSE}\r\nif (!require(\"BiocManager\", quietly = TRUE))\r\n    install.packages(\"BiocManager\")\r\n\r\n# The following initializes usage of Bioc devel\r\nBiocManager::install(version='devel')\r\n\r\nBiocManager::install(pkgs = \"BioGA\", version = \"devel\", force = TRUE)\r\n```\r\n\r\nYou can also install the package directly from GitHub \r\nusing the `devtools` package:\r\n\r\n```{r installation_from_github , eval=FALSE}\r\ndevtools::install_github(\"danymukesha/BioGA\")\r\n```\r\n\r\n\r\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdanymukesha%2Fbioga","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdanymukesha%2Fbioga","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdanymukesha%2Fbioga/lists"}