{"id":20425041,"url":"https://github.com/databio/episb-hub","last_synced_at":"2026-03-19T15:46:13.159Z","repository":{"id":86287808,"uuid":"155914078","full_name":"databio/episb-hub","owner":"databio","description":"Web UI/API for the Epigenome Switchboard Project","archived":false,"fork":false,"pushed_at":"2022-08-29T14:21:40.000Z","size":3352,"stargazers_count":0,"open_issues_count":15,"forks_count":0,"subscribers_count":18,"default_branch":"master","last_synced_at":"2025-09-11T10:15:49.532Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://episb.org/","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/databio.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"docs/contributing.md","funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":"docs/support.md","governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-11-02T19:44:24.000Z","updated_at":"2019-08-12T05:33:51.000Z","dependencies_parsed_at":"2023-03-11T05:16:32.607Z","dependency_job_id":null,"html_url":"https://github.com/databio/episb-hub","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/databio/episb-hub","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/databio%2Fepisb-hub","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/databio%2Fepisb-hub/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/databio%2Fepisb-hub/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/databio%2Fepisb-hub/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/databio","download_url":"https://codeload.github.com/databio/episb-hub/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/databio%2Fepisb-hub/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30299871,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-09T14:33:48.460Z","status":"ssl_error","status_checked_at":"2026-03-09T14:33:48.027Z","response_time":61,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-15T07:12:06.872Z","updated_at":"2026-03-09T15:03:07.002Z","avatar_url":"https://github.com/databio.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Episb hub\n\nUser documentation can be found at http://code.databio.org/episb\n\n## Running the app for development\n\n```\nFLASK_APP=\"main.py\" flask run\n```\n\nPoint browser to http://localhost:8888/\n\n\n## Running the app in a container\n\nTo build the episb-hub container locally and test, follow these steps:\n\n1. In the same directory as the `Dockerfile`:\n\n```\n$ docker build -t \u003cdocker image\u003e:\u003ctag optional\u003e .\n```\n\n2. Run the container from the image you just built:\n\n```\n$ docker run -d -p 80:80 --rm --name episb-hub \u003cdocker image\u003e:\u003ctag\u003e\n```\n\n3. Interact with and preview the site: http://localhost/ \n\n4. When done, stop the container:\n\n```\n$ docker stop episb-hub\n```\n\n### Running the app in a container with development mode\n\nTo run the container and have it reflect the changes, use the Dockerfile_dev to build the image:\n\n```\n$ docker build -f Dockerfile_dev -t episb .\n```\n\nTo run the container:\n\n```\n$ docker run -v /path/to/host/episb-hub:/app -p 80:80 --rm --name episb-hub -e FLASK_APP=main.py -e FLASK_DEBUG=1 episb flask run --host=0.0.0.0 --port=80\n```\n\nNow the development container will be viewable on your `localhost` and update with any changes you make.\n\n## ElasticSearch\n\nNote that this site requires ElasticSearch indices as a data provider for regions, experiments, segmentations, etc. Flask looks for ES indices at port 8080 of the localhost.\n\n\n## Docs:\n\nThese docs can be rendered locally for development with:\n\n```\nmkdocs serve -f mkdocs.yml\n```\n\nAnd can be built for deploy with:\n\n```\nRENDERED_DIR=\"$CODEBASE/code.databio.org/episb\"\nmkdocs build -f episb-docs/mkdocs.yml -d \"$RENDERED_DIR\"\n```\n\nOr by running `update_docs.sh`.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdatabio%2Fepisb-hub","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdatabio%2Fepisb-hub","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdatabio%2Fepisb-hub/lists"}