{"id":20425015,"url":"https://github.com/databio/geniml","last_synced_at":"2026-01-17T17:45:47.700Z","repository":{"id":186121893,"uuid":"672327040","full_name":"databio/geniml","owner":"databio","description":"Genomic interval machine learning","archived":false,"fork":false,"pushed_at":"2026-01-14T19:49:56.000Z","size":12537,"stargazers_count":21,"open_issues_count":10,"forks_count":3,"subscribers_count":8,"default_branch":"master","last_synced_at":"2026-01-14T23:38:56.897Z","etag":null,"topics":["genomic-intervals","machine-learning","representation-learning"],"latest_commit_sha":null,"homepage":"https://docs.bedbase.org/geniml/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-2-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/databio.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2023-07-29T17:34:55.000Z","updated_at":"2026-01-14T19:48:52.000Z","dependencies_parsed_at":"2025-04-12T18:54:48.472Z","dependency_job_id":"c16c156f-d9b9-43a4-b719-5ab477ff443d","html_url":"https://github.com/databio/geniml","commit_stats":null,"previous_names":["databio/geniml"],"tags_count":19,"template":false,"template_full_name":null,"purl":"pkg:github/databio/geniml","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/databio%2Fgeniml","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/databio%2Fgeniml/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/databio%2Fgeniml/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/databio%2Fgeniml/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/databio","download_url":"https://codeload.github.com/databio/geniml/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/databio%2Fgeniml/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28513975,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-17T13:38:16.342Z","status":"ssl_error","status_checked_at":"2026-01-17T13:37:44.060Z","response_time":85,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["genomic-intervals","machine-learning","representation-learning"],"created_at":"2024-11-15T07:12:02.132Z","updated_at":"2026-01-17T17:45:47.666Z","avatar_url":"https://github.com/databio.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Genomic interval machine learning (geniml)\n\nGeniml is a python package for building machine learning models of genomic interval data (BED files). It also includes ancillary functions to support other types of analyses of genomic interval data.\n\nDocumentation is hosted at \u003chttps://docs.bedbase.org/geniml/\u003e.\n\n\n## Installation\n### To install `geniml` use this commands.\n\nWithout specifying dependencies, the default dependencies will be installed, \nwhich DO NOT include machine learning (ML) or heavy processing libraries.\n\n\nFrom pypi:\n```\npip install geniml\n```\nor install the latest version from the GitHub repository:\n```\npip install git+https://github.com/databio/geniml.git\n```\n\n### To install Machine learning dependencies use this command:\n\nFrom pypi:\n```\npip install geniml[ml]\n```\n\n\n## Development\n\nRun tests (from `/tests`) with `pytest`. Please read the [contributor guide](https://docs.bedbase.org/geniml/contributing/) to contribute.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdatabio%2Fgeniml","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdatabio%2Fgeniml","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdatabio%2Fgeniml/lists"}