{"id":28395156,"url":"https://github.com/databiosphere/bgzip","last_synced_at":"2026-03-04T05:31:22.789Z","repository":{"id":46714701,"uuid":"248341912","full_name":"DataBiosphere/bgzip","owner":"DataBiosphere","description":"Fast streams for block gzip files.","archived":false,"fork":false,"pushed_at":"2025-11-11T19:11:30.000Z","size":22161,"stargazers_count":12,"open_issues_count":4,"forks_count":5,"subscribers_count":1,"default_branch":"master","last_synced_at":"2026-01-03T09:20:08.035Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/DataBiosphere.png","metadata":{"files":{"readme":"README.md","changelog":"Changes.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-03-18T21:00:39.000Z","updated_at":"2025-12-20T06:28:35.000Z","dependencies_parsed_at":"2025-06-27T01:31:35.138Z","dependency_job_id":"6769e1ae-6f9f-4623-bac1-8fd74284a0ac","html_url":"https://github.com/DataBiosphere/bgzip","commit_stats":null,"previous_names":[],"tags_count":13,"template":false,"template_full_name":null,"purl":"pkg:github/DataBiosphere/bgzip","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DataBiosphere%2Fbgzip","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DataBiosphere%2Fbgzip/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DataBiosphere%2Fbgzip/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DataBiosphere%2Fbgzip/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DataBiosphere","download_url":"https://codeload.github.com/DataBiosphere/bgzip/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DataBiosphere%2Fbgzip/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30072495,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-04T05:13:31.218Z","status":"ssl_error","status_checked_at":"2026-03-04T05:10:24.293Z","response_time":59,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-05-31T19:39:21.791Z","updated_at":"2026-03-04T05:31:22.743Z","avatar_url":"https://github.com/DataBiosphere.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# bgzip: block gzip streams\n_bgzip_ provides streams for block gzip files.\n\nCython is used under the hood to bypass Python's GIL and provide fast, parallelized inflation/deflation.\n\n```\nwith open(\"my_bgzipped_file.gz\", \"rb\") as raw:\n\twith bgzip.BGZipReader(raw) as fh:\n\t\tdata = fh.read(number_of_bytes)\n\nwith open(\"my_bgzipped_file.gz\", \"wb\") as raw:\n\twith bgzip.BGZipWriter(raw) as fh:\n\t\tfh.write(my_data)\n```\n\n## Installation\n\n```\npip install bgzip\n```\n\n#### Requirements\nbgzip requires [openmp](https://github.com/llvm/llvm-project/tree/master/openmp). On MacOS\nit can be installed with:\n```\nbrew install llvm\n```\n\n## Links\nProject home page [GitHub](https://github.com/DataBiosphere/bgzip)  \nPackage distribution [PyPI](https://pypi.org/project/bgzip/)\n\n### Bugs\nPlease report bugs, issues, feature requests, etc. on [GitHub](https://github.com/DataBiosphere/bgzip).\n\n![](https://travis-ci.org/DataBiosphere/bgzip.svg?branch=master) ![](https://badge.fury.io/py/bgzip.svg)\n\n## Credits\ngetm was created by [Brian Hannafious](https://github.com/xbrianh) at the\n[UCSC Genomics Institute](https://ucscgenomics.soe.ucsc.edu/).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdatabiosphere%2Fbgzip","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdatabiosphere%2Fbgzip","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdatabiosphere%2Fbgzip/lists"}