{"id":41154606,"url":"https://github.com/dataesr/scientific-tagger","last_synced_at":"2026-01-22T19:12:50.417Z","repository":{"id":81803418,"uuid":"331579565","full_name":"dataesr/scientific-tagger","owner":"dataesr","description":"Tagger for scholarly publications","archived":false,"fork":false,"pushed_at":"2024-06-04T09:56:33.000Z","size":6540,"stargazers_count":6,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-09-11T10:48:25.099Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dataesr.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2021-01-21T09:35:42.000Z","updated_at":"2024-06-04T09:56:36.000Z","dependencies_parsed_at":null,"dependency_job_id":"d0c76316-acd0-4a5e-834e-78fd6cab5171","html_url":"https://github.com/dataesr/scientific-tagger","commit_stats":null,"previous_names":["dataesr/scientific-tagger"],"tags_count":7,"template":false,"template_full_name":null,"purl":"pkg:github/dataesr/scientific-tagger","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dataesr%2Fscientific-tagger","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dataesr%2Fscientific-tagger/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dataesr%2Fscientific-tagger/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dataesr%2Fscientific-tagger/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dataesr","download_url":"https://codeload.github.com/dataesr/scientific-tagger/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dataesr%2Fscientific-tagger/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28669088,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-22T17:07:18.858Z","status":"ssl_error","status_checked_at":"2026-01-22T17:05:02.040Z","response_time":144,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-01-22T19:10:30.796Z","updated_at":"2026-01-22T19:12:50.407Z","avatar_url":"https://github.com/dataesr.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Scientific tagger\n\n![Build](https://img.shields.io/github/actions/workflow/status/dataesr/scientific_tagger/build.yml?branch=main)\n![Release](https://img.shields.io/github/v/release/dataesr/scientific_tagger)\n![License](https://img.shields.io/github/license/dataesr/scientific_tagger)\n\nThe scientific taggers aims at proposing subject classification for scholarly publications. So the input is a list of publications, only some metadata are taken into account (title, journal title, abstract,keywords and MeSH), not the full-text for the time being. Several classifications are implemented:\n- Biomedical subject classification based on Fields of Research [documented here](https://github.com/dataesr/scientific_tagger/blob/main/doc/scientific_tagger.pdf). The results can be reproduced with this [Jupyter notebook](https://github.com/dataesr/scientific_tagger/blob/main/notebooks/Article_Table_Figures.ipynb)\n- Pascal and Francis tags\n- Sustainable Development Goals (SDG) from UN, based on [Dataset of search queries to map scientific publications to the UN sustainable development goals, Bordignon, 2021](https://doi.org/10.1016/j.dib.2021.106731)\n\n## Run it locally\n```shell\ngit clone git@github.com:dataesr/scientific-tagger.git\ncd scientific-tagger\ndocker compose pull \u0026\u0026 docker compose down \u0026\u0026 docker system prune -f \u0026\u0026 docker compose up\n```\n\nIn your browser, you now have :\n- scientific-tagger : http://localhost:5004/\n\n\n## Release\nIt uses [semver](https://semver.org/).\n\nTo create a new release, do\n```shell\nmake release VERSION=x.x.x\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdataesr%2Fscientific-tagger","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdataesr%2Fscientific-tagger","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdataesr%2Fscientific-tagger/lists"}