{"id":19722013,"url":"https://github.com/datajoint/datajoint-citations","last_synced_at":"2026-03-05T06:01:25.387Z","repository":{"id":44584702,"uuid":"247990207","full_name":"datajoint/datajoint-citations","owner":"datajoint","description":"Papers about DataJoint or using DataJoint","archived":false,"fork":false,"pushed_at":"2022-02-06T22:42:15.000Z","size":588,"stargazers_count":0,"open_issues_count":1,"forks_count":4,"subscribers_count":9,"default_branch":"master","last_synced_at":"2025-09-05T10:32:13.318Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/datajoint.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":"citations.tex","codeowners":null,"security":null,"support":null}},"created_at":"2020-03-17T14:25:29.000Z","updated_at":"2022-02-06T22:39:03.000Z","dependencies_parsed_at":"2022-09-03T21:52:58.900Z","dependency_job_id":null,"html_url":"https://github.com/datajoint/datajoint-citations","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/datajoint/datajoint-citations","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/datajoint%2Fdatajoint-citations","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/datajoint%2Fdatajoint-citations/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/datajoint%2Fdatajoint-citations/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/datajoint%2Fdatajoint-citations/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/datajoint","download_url":"https://codeload.github.com/datajoint/datajoint-citations/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/datajoint%2Fdatajoint-citations/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30111779,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-05T03:40:26.266Z","status":"ssl_error","status_checked_at":"2026-03-05T03:39:15.902Z","response_time":93,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-11T23:16:13.643Z","updated_at":"2026-03-05T06:01:25.357Z","avatar_url":"https://github.com/datajoint.png","language":"TeX","funding_links":[],"categories":[],"sub_categories":[],"readme":"# datajoint-citations\nThis repository contains BibTeX collections of papers.\n- `citations_all.bib` collects all papers, including those that briefly mention DataJoint, or foundational papers on relational database infrastructure.\n- `citations_all.tex` categorizes these papers into...\n   - Neuroscience studies that use DataJoint\n   - Other studies that use DataJoint\n   - Publications describing DataJoint\n   - Data infrastructure papers involving DataJoint\n   - Other papers that make mention of DataJoint\n- `citations_used.bib` collects papers that used DataJoint as part of their study (i.e., top two categories above)\n- `citations_used.tex` is used to generate the corresponding markdown file for our website.\n- `apa.csl` contains specifications for APA citation formatting\n\nNew papers that use DataJoint should be added to both `.bib` files.\n\nFuture work on this repository should investigate tools to generate `citations_used.bib` based on mention in corresponding sections of `citations_all.tex`.\n\n# Usage\n\nTo download dependencies for OSX:\n```bash\nbrew install basictex pandoc\ntlmgr install fourier enumitem apacite\n```\n\nTo generate a pdf from a `.tex` file, and remove auxiliary files:\n```bash\npdflatex citations_\u003cversion\u003e.tex\nbibtex citations_\u003cversion\u003e\npdflatex citations_\u003cversion\u003e.tex\npdflatex citations_\u003cversion\u003e.tex\nrm *.aux *.blg *.out *.bbl *.log\n```\n\nTo generate a markdown file:\n```bash\npandoc -s --bibliography citations_used.bib --citeproc --csl=apa.csl \\\ncitations_used.tex -t gfm -o citations_used.md \\\n--metadata title=\"Publications that use DataJoint\"\n```\n\nThis markdown file then requires minor edits to turn the default table at the top into a header:\n```\n---\nbibliography: citations_used.bib\ncsl: apa.csl\ntitle: Publications using DataJoint\n---\n```\nbecomes: `#Publications using DataJoint`\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdatajoint%2Fdatajoint-citations","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdatajoint%2Fdatajoint-citations","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdatajoint%2Fdatajoint-citations/lists"}