{"id":17595208,"url":"https://github.com/dcasella/carrillo-lipman","last_synced_at":"2025-03-29T19:41:57.794Z","repository":{"id":61317636,"uuid":"77753326","full_name":"dcasella/carrillo-lipman","owner":"dcasella","description":"Carrillo-Lipman algorithm implementation","archived":false,"fork":false,"pushed_at":"2017-03-14T10:09:59.000Z","size":2,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-03-26T02:51:25.702Z","etag":null,"topics":["bioinformatics","c","msa"],"latest_commit_sha":null,"homepage":"","language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dcasella.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-12-31T19:25:25.000Z","updated_at":"2022-10-12T21:41:43.000Z","dependencies_parsed_at":"2022-10-14T22:44:26.586Z","dependency_job_id":null,"html_url":"https://github.com/dcasella/carrillo-lipman","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dcasella%2Fcarrillo-lipman","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dcasella%2Fcarrillo-lipman/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dcasella%2Fcarrillo-lipman/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dcasella%2Fcarrillo-lipman/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dcasella","download_url":"https://codeload.github.com/dcasella/carrillo-lipman/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246237418,"owners_count":20745348,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","c","msa"],"created_at":"2024-10-22T07:43:53.142Z","updated_at":"2025-03-29T19:41:57.771Z","avatar_url":"https://github.com/dcasella.png","language":"C","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Carrillo Lipman\n\n\u003e Algorithm explained in section 14.6.1 \"A speedup for the exact solution\" from Dan Gusfield's \"Algorithms on Strings, Trees, and Sequences\"  \n\nImplementation of the Carrillo-Lipman algorithm for aligning three sequences.  \nThis is an heuristic of the multiple sequence alignment problem with the Sum-of-Pairs objective function.  \nThe algorithm takes in input three strings and a parameter *upper_bound*, and prints the score of the best possible alignment between the strings.  \n\u0026nbsp;\n\n## Interface\n\n```c\nvoid multi_align(char *seq_a, char *seq_b, char *seq_c, size_t upper_bound);\n```\n\u0026nbsp;\n\n## Example\n\n```c\nsize_t upper_bound = 42;\n\nmulti_align(\"seq1\", \"seq2\", \"seq3\", upper_bound);\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdcasella%2Fcarrillo-lipman","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdcasella%2Fcarrillo-lipman","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdcasella%2Fcarrillo-lipman/lists"}