{"id":35524562,"url":"https://github.com/delintenicolas/unravel","last_synced_at":"2026-02-11T19:01:37.342Z","repository":{"id":38313092,"uuid":"455556787","full_name":"DelinteNicolas/UNRAVEL","owner":"DelinteNicolas","description":"This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).","archived":false,"fork":false,"pushed_at":"2026-02-02T13:25:48.000Z","size":49024,"stargazers_count":28,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"main","last_synced_at":"2026-02-03T02:11:33.775Z","etag":null,"topics":["diffusion","fixel","microstructure","model","mri","tractography"],"latest_commit_sha":null,"homepage":"https://unravel.readthedocs.io/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/DelinteNicolas.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"docs/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"docs/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":"docs/CODEOWNERS","security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2022-02-04T13:26:14.000Z","updated_at":"2026-02-02T13:09:20.000Z","dependencies_parsed_at":"2023-07-15T22:44:16.239Z","dependency_job_id":"dd9746df-1baa-4410-9d2a-9435ec966a99","html_url":"https://github.com/DelinteNicolas/UNRAVEL","commit_stats":null,"previous_names":["delintenicolas/time"],"tags_count":34,"template":false,"template_full_name":null,"purl":"pkg:github/DelinteNicolas/UNRAVEL","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DelinteNicolas%2FUNRAVEL","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DelinteNicolas%2FUNRAVEL/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DelinteNicolas%2FUNRAVEL/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DelinteNicolas%2FUNRAVEL/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DelinteNicolas","download_url":"https://codeload.github.com/DelinteNicolas/UNRAVEL/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DelinteNicolas%2FUNRAVEL/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29341697,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-11T18:58:20.535Z","status":"ssl_error","status_checked_at":"2026-02-11T18:56:44.814Z","response_time":97,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["diffusion","fixel","microstructure","model","mri","tractography"],"created_at":"2026-01-04T00:47:49.195Z","updated_at":"2026-02-11T19:01:37.336Z","avatar_url":"https://github.com/DelinteNicolas.png","language":"Python","readme":"# UNRAVEL - UtiliziNg tRActography to uncoVEr muLti-fixel microstructure\n\n\u003cp align=\"center\"\u003e\n  \u003cimg src=\"https://github.com/DelinteNicolas/UNRAVEL/assets/70629561/636f7cfa-8718-496c-ab61-7a86b37d774e\" width=\"600\" /\u003e\n\u003c/p\u003e\n\nWelcome to the UNRAVEL's Github repository!\n\n[![Documentation Status](https://readthedocs.org/projects/unravel/badge/?version=latest)](https://unravel.readthedocs.io/en/latest/?badge=latest)\n[![PyPI](https://img.shields.io/pypi/v/unravel-python?label=pypi%20package)](https://pypi.org/project/unravel-python/)\n[![PyPI - Downloads](https://img.shields.io/pypi/dm/unravel-python)](https://pypi.org/project/unravel-python/)\n![GitHub repo size](https://img.shields.io/github/repo-size/DelinteNicolas/unravel)\n[![DOI](https://zenodo.org/badge/455556787.svg)](https://zenodo.org/badge/latestdoi/455556787)\n\nThe documentation of the code is available on [readthedocs](https://unravel.readthedocs.io/en/latest/)\n\n## Description\n\nTo *unravel* has two meanings :\n\n* to disentangle the fibers of\n* to resolve the intricacy, complexity, or obscurity of\n\nWith the UNRAVEL framework, we utilize tractography to unravel the microstructure of multi-fixel models. \n\nThis repository contains the code used to combine macroscopic tractography information with microscopic multi-fixel model estimates in order to improve the accuracy in the estimation of the microstructural properties of neural fibers in a specified tract.\n\n## Installing \u0026 importing\n\n### Online install\n\nThe UNRAVEL package is available through ```pip install``` under the name ```unravel-python```. Note that the online version might not always be up to date with the latest changes.\n\n```\npip install unravel-python\n```\nTo upgrade the current version : ```pip install unravel-python --upgrade```.\n\nTo install a specific version of the package, use\n```\npip install unravel-python==1.0.0\n```\nAll available versions are listed in [PyPI](https://pypi.org/project/unravel-python/). The package names follow the rules of [semantic versioning](https://semver.org/).\n\nTo install the package with the optional dependencies, use\n```\npip install unravel-python[viz]\n```\n\n### Local install\n\nIf you want to download the latest version directly from GitHub, you can clone this repository\n```\ngit clone https://github.com/DelinteNicolas/unravel.git\n```\nFor a more frequent use of the library, you may wish to permanently add the package to your current Python environment. Navigate to the folder where this repository was cloned or downloaded (the folder containing the ```setup.py``` file) and install the package as follows\n```\ncd UNRAVEL\npip install .\n```\n\nIf you have an existing install, and want to ensure package and dependencies are updated use --upgrade\n```\npip install --upgrade .\n```\n### Importing\nAt the top of your Python scripts, import the library as\n```\nimport unravel\n```\n\n### Checking current version installed\n\nThe version of the UNRAVEL package installed can be displayed by typing the following command in your python environment\n```\nunravel.__version__\n``` \nor\n```\npip show unravel-python\n```\n\n### Uninstalling\n```\npip uninstall unravel-python\n```\n\n## Example data and code\n\nAn example use of the main methods and outputs of UNRAVEL is written in the `example.py` file. A tractogram of the middle anterior section of the corpus callosum is used as an example tractography input.\n\n\u003cp align=\"center\"\u003e\n  \u003cimg src=\"https://user-images.githubusercontent.com/70629561/169159877-ffbb9b99-ab99-451a-b6a1-24c0b1b5d124.gif\" /\u003e\n\n## Publication \u0026 citation\n\nMain publication DOI : [10.3389/fnins.2023.1199568](https://doi.org/10.3389/fnins.2023.1199568)\n\nCite article as : \"Delinte N, Dricot L, Macq B, Gosse C, Van Reybroeck M and Rensonnet G (2023) Unraveling multi-fixel microstructure with tractography and angular weighting. Front. Neurosci. 17:1199568. doi: 10.3389/fnins.2023.1199568\"\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdelintenicolas%2Funravel","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdelintenicolas%2Funravel","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdelintenicolas%2Funravel/lists"}