{"id":15287455,"url":"https://github.com/dereneaton/ipyrad","last_synced_at":"2025-04-05T04:11:36.486Z","repository":{"id":44330807,"uuid":"43830532","full_name":"dereneaton/ipyrad","owner":"dereneaton","description":"Interactive assembly and analysis of RAD-seq data sets","archived":false,"fork":false,"pushed_at":"2025-03-18T20:32:35.000Z","size":103646,"stargazers_count":75,"open_issues_count":63,"forks_count":41,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-03-29T03:07:21.190Z","etag":null,"topics":["assembly","genomics","phylogeny","rad-seq"],"latest_commit_sha":null,"homepage":"http://ipyrad.readthedocs.io","language":"Jupyter 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Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"*ipyrad*: interactive assembly and analysis of RAD-seq data sets\n--------------------------------------------------------------\n\nWelcome to ipyrad, an interactive toolkit for assembly and analysis of \nrestriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) \nfor population genetic and phylogenetic studies.\n\nDocumentation\n---------\nFull documentation is available here (`\u003chttp://ipyrad.readthedocs.io\u003e`_),\nwhere you will find installation instructions, example tutorials, and a full user guide.\n\n\nQuick Install\n------------\nipyrad is available through the Python package installer `conda` with all dependencies included.\nIf you have `conda` installed you can simply run:\n\n    conda install ipyrad -c conda-forge -c bioconda\n\n\nIf you do not have `conda` installed then you will enjoy our \n`complete installation instructions \u003chttps://ipyrad.readthedocs.io/en/master/3-installation.html\u003e`_.\n\nRun ipyrad in Binder\n--------------------\n.. image:: https://mybinder.org/badge_logo.svg\n    :alt: Launch ipyrad in a binder instance\n    :target: https://mybinder.org/v2/gh/dereneaton/ipyrad/master\n\nGetting Help\n------------\nJoin the ipyrad gitter channel and ask a question, request a feature, or flame the developers:\n\n.. image:: https://badges.gitter.im/Join%20Chat.svg\n   :alt: Join the chat at https://gitter.im/dereneaton/ipyrad\n   :target: https://gitter.im/dereneaton/ipyrad?utm_source=badge\u0026utm_medium=badge\u0026utm_campaign=pr-badge\u0026utm_content=badge\n\n\nLicense\n-------\nGPLv3\n\nCite the Manuscript\n-------------------\nEaton DAR \u0026 Overcast I. \"ipyrad: Interactive assembly and analysis of RADseq datasets.\" Bioinformatics (2020).\n\nContributors\n------------\n+ `Deren Eaton \u003cderen.eaton@yale.edu\u003e`_  \n+ `Isaac Overcast \u003cisaac.overcast@gmail.com\u003e`_  \n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdereneaton%2Fipyrad","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdereneaton%2Fipyrad","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdereneaton%2Fipyrad/lists"}