{"id":15674760,"url":"https://github.com/dermatologist/ckblib","last_synced_at":"2025-04-19T13:06:52.428Z","repository":{"id":36980789,"uuid":"356985658","full_name":"dermatologist/ckblib","owner":"dermatologist","description":"Tools to create a clinical knowledge graph from biomedical literature.  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These knowledge graphs can be visualized in a semantically enriched way that we call ClinGraph (see above). ckblib consists of four modules:\n\n* The 'library' module wraps the NCBI's E-Utils API for published article abstracts.\n* The 'qtakes' module provides a programmable interface to [quick-ctakes](https://github.com/dermatologist/quick-ctakes) or the quarkus based apache ctakes, a fast clinical text annotation engine.\n* The 'umls' module is a wrapper for UMLS REST API managing the TGT and ST tokens using the reactive WebClient. See [RestTicketServiceTest.java](https://github.com/dermatologist/ckblib/blob/develop/umls/src/test/java/com/canehealth/ckblib/umls/service/RestTicketServiceTest.java) for example use. A list of available [UMLS REST APIs are here.](https://documentation.uts.nlm.nih.gov/rest/home.html). My Javascript library for similar purpose [(umlsjs) is here.](https://github.com/dermatologist/umlsjs)\n* Finally, the graph module provides the Neo4J models, repositories and services for abstracting as a knowledge graph.\n\n## How to use\n\n* [Read how to install mvn packages from GitHub](https://docs.github.com/en/packages/guides/configuring-apache-maven-for-use-with-github-packages#installing-a-package)\n* **This will be available on GitHub packages soon. In the mean time 'mvn clean install' locally**\n* Include dependencies in pom.xml\n* See an application [![forthebadge](https://forthebadge.com/images/badges/built-with-love.svg)](https://gulfdoctor.net) using ckblib: [GulfDoctor](https://gulfdoctor.net)\n\n```\n\u003cdependency\u003e\n  \u003cgroupId\u003ecom.canehealth.ckblib\u003c/groupId\u003e\n  \u003cartifactId\u003elibrary\u003c/artifactId\u003e\n  \u003cversion\u003e${latest-version-from-releases-tab}\u003c/version\u003e\n\u003c/dependency\u003e\n\n\u003cdependency\u003e\n  \u003cgroupId\u003ecom.canehealth.ckblib\u003c/groupId\u003e\n  \u003cartifactId\u003eqtakes\u003c/artifactId\u003e\n  \u003cversion\u003e${latest-version-from-releases-tab}\u003c/version\u003e\n\u003c/dependency\u003e\n\n\u003cdependency\u003e\n  \u003cgroupId\u003ecom.canehealth.ckblib\u003c/groupId\u003e\n  \u003cartifactId\u003egraph\u003c/artifactId\u003e\n  \u003cversion\u003e${latest-version-from-releases-tab}\u003c/version\u003e\n\u003c/dependency\u003e\n\n\u003cdependency\u003e\n  \u003cgroupId\u003ecom.canehealth.ckblib\u003c/groupId\u003e\n  \u003cartifactId\u003eumls\u003c/artifactId\u003e\n  \u003cversion\u003e${latest-version-from-releases-tab}\u003c/version\u003e\n\u003c/dependency\u003e\n```\n* Read [javadoc](https://dermatologist.github.io/ckblib/index.html). Documentation is WIP.\n* Check the [application module](https://github.com/dermatologist/ckblib/blob/develop/application/src/main/java/com/canehealth/ckblib/application/DemoApplication.java) for an example end-to-end use.\n\n## Author\n\n* [Bell Eapen](https://nuchange.ca) | [contact](https://nuchange.ca/contact) | [![Twitter Follow](https://img.shields.io/twitter/follow/beapen?style=social)](https://twitter.com/beapen)\n\n## Contributors\n* PR welcome.\n* Please see CONTRIBUTING.md for details.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdermatologist%2Fckblib","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdermatologist%2Fckblib","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdermatologist%2Fckblib/lists"}