{"id":18736728,"url":"https://github.com/digitalslidearchive/digital_slide_archive","last_synced_at":"2025-04-04T16:11:19.903Z","repository":{"id":3214661,"uuid":"48765002","full_name":"DigitalSlideArchive/digital_slide_archive","owner":"DigitalSlideArchive","description":"The official deployment of the Digital Slide Archive and HistomicsTK.","archived":false,"fork":false,"pushed_at":"2025-04-04T14:06:55.000Z","size":36449,"stargazers_count":117,"open_issues_count":25,"forks_count":55,"subscribers_count":15,"default_branch":"master","last_synced_at":"2025-04-04T15:23:30.206Z","etag":null,"topics":["bioimage-informatics","digital-slide-archive","hacktoberfest","histology","histomicstk"],"latest_commit_sha":null,"homepage":"https://digitalslidearchive.github.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/DigitalSlideArchive.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2015-12-29T20:03:50.000Z","updated_at":"2025-04-04T13:38:14.000Z","dependencies_parsed_at":"2023-10-17T01:56:01.076Z","dependency_job_id":"629efce9-3aae-462a-9ebd-2b937ecc5338","html_url":"https://github.com/DigitalSlideArchive/digital_slide_archive","commit_stats":{"total_commits":527,"total_committers":16,"mean_commits":32.9375,"dds":0.5294117647058824,"last_synced_commit":"2d5873be95f5df896a9ea631dcac4dbaaaa8e145"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DigitalSlideArchive%2Fdigital_slide_archive","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DigitalSlideArchive%2Fdigital_slide_archive/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DigitalSlideArchive%2Fdigital_slide_archive/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DigitalSlideArchive%2Fdigital_slide_archive/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DigitalSlideArchive","download_url":"https://codeload.github.com/DigitalSlideArchive/digital_slide_archive/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247208142,"owners_count":20901570,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioimage-informatics","digital-slide-archive","hacktoberfest","histology","histomicstk"],"created_at":"2024-11-07T15:22:16.400Z","updated_at":"2025-04-04T16:11:19.884Z","avatar_url":"https://github.com/DigitalSlideArchive.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"Digital Slide Archive\n=====================\n\nThe Digital Slide Archive is a system for working with large microscopy images.\n\n- Organize images from a variety of assetstores, such as local file systems and S3.\n\n- Provide user access controls.\n\n- Image annotation and review.\n\n- Run algorithms on all or parts of images.\n\nWebsite\n-------\n\nSee `\u003chttps://digitalslidearchive.github.io/digital_slide_archive/\u003e`_ for information about the system.\n\nDemo Instance\n-------------\n\n`http://demo.kitware.com/histomicstk/histomicstk \u003chttp://demo.kitware.com/histomicstk/histomicstk#?image=5c74528be62914004b10fd1e\u003e`_.\n\nLicense\n-----------------------------------------------------------\n\nThe Digital Slide Archive is made available under the Apache License, Version 2.0. For more details, see `LICENSE \u003chttps://github.com/DigitalSlideArchive/digital_slide_archive/blob/master/LICENSE\u003e`_\n\nCommunity\n-----------------------------------------------------------\n\n`Discussions \u003chttps://github.com/DigitalSlideArchive/digital_slide_archive/discussions\u003e`_ | `Issues \u003chttps://github.com/DigitalSlideArchive/digital_slide_archive/issues\u003e`_ | `Contact Us \u003chttps://www.kitware.com/contact-us/\u003e`_\n\nInstallation\n------------\n\nFor installation instructions, see the complete `docker compose example \u003c./devops/dsa\u003e`_.\n\nThere is a `migration guide \u003c./docs/migration.rst\u003e`_  from the Girder 2 version or from the ``deploy_docker.py`` script.\n\nAdding Docker Tasks\n-------------------\n\nDocker tasks conforming to the `slicer_cli_web \u003chttps://github.com/girder/slicer_cli_web\u003e`_ module's requirements can be added.  These tasks appear in the HistomicsUI interface and in the Girder interface.  An administrator can add a Docker image by going to the slicer_cli_web plugin settings and entering the Docker image name there.  For instance, to get the HistomicsTK tasks, add ``dsarchive/histomicstk:latest``.\n\nTo use a docker image from a docker repository that requires authentication, see the comments on how to pass through authenticaition in the ``docker-compose.yml`` file.  On the host machine (and the worker machines if they are separate), login to the docker repository, saving credentials.  This could be done with the command ``docker login \u003crepository\u003e`` which will then prompt for username and password.  Other docker config values can be set this way, too.\n\nFunding\n-------\nThis work was funded in part by the `NIH grant U24-CA194362-01 \u003chttp://grantome.com/grant/NIH/U24-CA194362-01\u003e`_.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdigitalslidearchive%2Fdigital_slide_archive","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdigitalslidearchive%2Fdigital_slide_archive","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdigitalslidearchive%2Fdigital_slide_archive/lists"}