{"id":22852929,"url":"https://github.com/dipterix/three-brain-js","last_synced_at":"2025-09-22T23:33:29.199Z","repository":{"id":65470309,"uuid":"591467722","full_name":"dipterix/three-brain-js","owner":"dipterix","description":"Javascript engine for 3D brain model (used by RAVE project)","archived":false,"fork":false,"pushed_at":"2025-03-02T02:37:01.000Z","size":33864,"stargazers_count":16,"open_issues_count":0,"forks_count":4,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-03-30T14:41:56.193Z","etag":null,"topics":["ecog","electrode-localization","freesurfer","ieeg","mri","mri-brain","mri-images","neuroscience","nifti-viewer","seeg","webgl2"],"latest_commit_sha":null,"homepage":"","language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dipterix.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-01-20T20:42:15.000Z","updated_at":"2025-03-29T19:54:35.000Z","dependencies_parsed_at":"2024-06-23T04:55:58.245Z","dependency_job_id":null,"html_url":"https://github.com/dipterix/three-brain-js","commit_stats":{"total_commits":28,"total_committers":2,"mean_commits":14.0,"dds":0.0357142857142857,"last_synced_commit":"e4bd6eb17fde87631b0f24ddfc312c39f69d99bd"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dipterix%2Fthree-brain-js","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dipterix%2Fthree-brain-js/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dipterix%2Fthree-brain-js/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dipterix%2Fthree-brain-js/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dipterix","download_url":"https://codeload.github.com/dipterix/three-brain-js/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":251674978,"owners_count":21625716,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["ecog","electrode-localization","freesurfer","ieeg","mri","mri-brain","mri-images","neuroscience","nifti-viewer","seeg","webgl2"],"created_at":"2024-12-13T06:09:58.645Z","updated_at":"2025-09-22T23:33:24.157Z","avatar_url":"https://github.com/dipterix.png","language":"JavaScript","funding_links":[],"categories":[],"sub_categories":[],"readme":"## JavaScript Library for YAEL (Your Advanced Electrode Localizer)\n\n\u003cimg src=\"https://github.com/dipterix/threeBrain/blob/master/adhoc/demo.gif?raw=true\" width=\"100%\" /\u003e\n\n[![](https://img.shields.io/badge/demo-rave.wiki-green)](https://rave.wiki/posts/3dviewer/viewer201.html)\n[![](https://img.shields.io/badge/DOI-10.1523%2FENEURO.0328--23.2023-blue?link=https%3A%2F%2Fdoi.org%2F10.1523%2FENEURO.0328-23.2023)](https://doi.org/10.1523/ENEURO.0328-23.2023)\n![](https://img.shields.io/github/package-json/v/dipterix/three-brain-js/main)\n[![](https://img.shields.io/npm/v/%40rave-ieeg%2Fthree-brain)](https://www.npmjs.com/package/@rave-ieeg/three-brain)\n\n**This repository is ONLY for developers who wish to incorporate YAEL into their own 3D programs, not for end-users.** If you are looking for integrated electrode localization \u0026 visualization tools, please check our website: [rave.wiki](https://rave.wiki).\n\nThis repository contains a JavaScript engine for visualizing 3D brain models via modern web browsers (with [`WebGL2` support](https://get.webgl.org/webgl2/)). The key features include:\n\n* Visualizing surface models (FreeSurfer surface, AFNI/SUMA)\n* Overlay T1 MR images as anatomical slices (FreeSurfer `.mgh/mgz`, NIfTI `.nii`)\n* Overlay volume data in terms of voxel cubes (NIfTI `.nii`)\n* Overlay electrodes as spheres\n* Color/Animate electrodes based on their values (continuous, categorical)\n* Electrode localization with CT at original resolution (paper in proceeding)\n* Group-level electrode mapping (via MNI or SUMA 141 brain)\n\nThe data configuration files are currently generated by the R package [`threeBrain`](https://github.com/dipterix/threeBrain/). Python package [`threebrainpy`](https://pypi.org/project/threebrainpy/) is also under active development.\n\nPlease see \"Roadmap\" for details.\n\nFor hard-core developers who wish to incorporate the package into your project:\n\n```sh\nnpm i @rave-ieeg/three-brain\n```\n\n## Citation\n\nPlease cite the following paper:\n\n* Wang Z, Magnotti JF, Zhang X, Beauchamp MS. _YAEL: your advanced electrode localizer._ eNeuro 19 October 2023, 10 (10); DOI: 10.1523/ENEURO.0328-23.2023\n\nIf you are interested in the bigger framework (RAVE: reproducible analysis and visualization of iEEG), please check:\n\n* Magnotti JF, Wang Z, Beauchamp MS. _RAVE: comprehensive open-source software for reproducible analysis and visualization of intracranial EEG data._ NeuroImage (2020) 223:117341\n\n## License\n\nThe package is licensed under MPL-2.0 license. \n\nThe purpose is to avoid virus-like copyleft licenses such as GPL. MPL-2.0 allows `three-brain-js` library to be *linked* as whole without forcing to change your own license (even it's proprietary). However, any redistribution of the original or modified copies outside your organizations shall be released under MPL-2.0 or more rigid open-source license. This is not a legal advice, nor the license itself, and may not cover important issues that affect you and your specific situation. As a result, please read the license itself, or seek legal advice from a lawyer for any questions.\n\n\n\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdipterix%2Fthree-brain-js","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdipterix%2Fthree-brain-js","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdipterix%2Fthree-brain-js/lists"}