{"id":13703416,"url":"https://github.com/divonlan/genozip","last_synced_at":"2026-05-13T10:01:01.758Z","repository":{"id":42652648,"uuid":"228133171","full_name":"divonlan/genozip","owner":"divonlan","description":"A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too","archived":false,"fork":false,"pushed_at":"2026-04-03T14:59:19.000Z","size":1166692,"stargazers_count":180,"open_issues_count":1,"forks_count":16,"subscribers_count":2,"default_branch":"master","last_synced_at":"2026-04-03T18:48:49.328Z","etag":null,"topics":["23andme","bam","bgzip","bwa","compression","cram","fasta","fastq","genomics","gvf","gzip","sam","samtools","vcf"],"latest_commit_sha":null,"homepage":"","language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/divonlan.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS","dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2019-12-15T05:23:54.000Z","updated_at":"2026-04-03T14:58:30.000Z","dependencies_parsed_at":"2026-04-03T17:02:24.170Z","dependency_job_id":null,"html_url":"https://github.com/divonlan/genozip","commit_stats":null,"previous_names":[],"tags_count":327,"template":false,"template_full_name":null,"purl":"pkg:github/divonlan/genozip","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/divonlan%2Fgenozip","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/divonlan%2Fgenozip/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/divonlan%2Fgenozip/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/divonlan%2Fgenozip/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/divonlan","download_url":"https://codeload.github.com/divonlan/genozip/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/divonlan%2Fgenozip/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32977273,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-13T06:31:55.726Z","status":"ssl_error","status_checked_at":"2026-05-13T06:31:51.336Z","response_time":115,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["23andme","bam","bgzip","bwa","compression","cram","fasta","fastq","genomics","gvf","gzip","sam","samtools","vcf"],"created_at":"2024-08-02T21:00:54.533Z","updated_at":"2026-05-13T10:01:01.752Z","avatar_url":"https://github.com/divonlan.png","language":"C","funding_links":[],"categories":["Data Tools"],"sub_categories":["Compressing"],"readme":"\u003c!DOCTYPE html\u003e\n\u003c!--                                                                                                      --\u003e\n\u003c!-- README.md                                                                                            --\u003e\n\u003c!-- Copyright (C) 2019-2026 Genozip Limited. Patent Pending.                                                --\u003e\n\u003c!-- Please see terms and conditions in the file LICENSE.txt\n\u003c!--                                                                                                      --\u003e\n\u003c!-- This file needs to be compliant to both Markdown and HTML. It is:                                    --\u003e\n\u003c!-- 1. rendered as README.md by github                                                                   --\u003e\n\u003c!-- 2. copied as HTML to the Mac installer                                                               --\u003e\n\u003c!-- 3. copied into meta.yaml, after removing all the HTML stuff                                          --\u003e\n\u003c!-- 4. rendered as README.md in Docker Hub                                                               --\u003e\n\u003c!-- 5. converted to Markdown and embedded in conda/README.template.md to generate conda feedstock README --\u003e\n\u003c!--                                                                                                      --\u003e\n\u003c!-- To preview in Visual Studio Code: Ctrl+Shift+V with the \"HTML Preview\" extension                     --\u003e\n\n[![Current Release](https://img.shields.io/github/v/release/divonlan/genozip \"Current Release\")](https://github.com/divonlan/genozip/releases/latest) [![Conda Downloads](https://img.shields.io/conda/dn/conda-forge/genozip?label=Conda%20Downloads\u0026style=flat-square)](https://anaconda.org/conda-forge/genozip)\n\n\u003ch1\u003eGenozip\u003c/h1\u003e\u003cbr\u003e\n\u003cbr\u003e\n\u003cb\u003eGenozip\u003c/b\u003e is a lossless compressor for  FASTQ, BAM/CRAM, VCF and \u003ca href=\"https://www.genozip.com/compression\"\u003emany other genomic files\u003c/a\u003e - see https://genozip.com\u003cbr\u003e\n\u003cbr\u003e\nGenozip is also available on \u003cb\u003eConda\u003c/b\u003e and binary downloads, see \u003ca href=\"https://genozip.com/installing\"\u003einstallation options\u003c/a\u003e.\u003cbr\u003e\n\u003cbr\u003e\nBuilding from source: make -j (required for building: gcc 8.5 or above ; nasm).\u003cbr\u003e\n\u003cbr\u003e\n\u003ch2\u003eNew: \u003ca href=\"https://genozip.com\"\u003eGenozip 15\u003c/a\u003e - with Deep™ - losslessly co-compressing BAM and FASTQ files:\u003c/h2\u003e\n\n![v15 deep benchmark](https://github.com/divonlan/genozip/assets/56345591/39c7e9c5-135d-49c9-9213-89d4b830842a)\n\n\u003cb\u003eGenozip\u003c/b\u003e Genozip is a commercial product, but it is free for students. See \u003ca href=\"https://genozip.com/academic\"\u003eeligibility\u003c/a\u003e and \u003ca href=\"https://genozip.com/get-genozip\"\u003eother licensing options\u003c/a\u003e or contact \u003ca href=\"mailto://sales@genozip.com\"\u003esales@genozip.com\u003c/a\u003e \u003cbr\u003e\n\u003cbr\u003e\n\u003cb\u003eIMPORTANT\u003c/b\u003e: Genozip is a commercial product, \u003cb\u003eNOT AN OPEN SOURCE\u003c/b\u003e product - we provide our source code to assure users that they will always have access to the code needed to decompress their files. \u003cb\u003eHOWEVER\u003c/b\u003e, forking, reverse engineering, code modifications, derivative works or inclusion of the code or parts thereof into other software packages is strictly forbidden by the \u003ca href=\"https://genozip.com/license\"\u003elicense\u003c/a\u003e.\u003cbr\u003e\n\u003cbr\u003e\nAttributions for 3rd party source components: \u003ca href=\"https://genozip.com/attributions\"\u003eattributions\u003c/a\u003e.\u003cbr\u003e\n\u003cbr\u003e\n\u003cb\u003eTHIS SOFTWARE IS PROVIDED \\\"AS IS\\\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS, COPYRIGHT HOLDERS OR DISTRIBUTORS OF THIS SOFTWARE BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\u003c/b\u003e\u003cbr\u003e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdivonlan%2Fgenozip","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdivonlan%2Fgenozip","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdivonlan%2Fgenozip/lists"}