{"id":21441764,"url":"https://github.com/dmis-lab/bioasq9b-dmis","last_synced_at":"2025-03-17T00:43:18.870Z","repository":{"id":97388606,"uuid":"372730309","full_name":"dmis-lab/bioasq9b-dmis","owner":"dmis-lab","description":"KU-DMIS at BioASQ 9","archived":false,"fork":false,"pushed_at":"2021-09-27T08:49:55.000Z","size":70,"stargazers_count":4,"open_issues_count":0,"forks_count":0,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-01-23T10:36:05.799Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dmis-lab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-06-01T06:52:06.000Z","updated_at":"2023-08-02T11:43:44.000Z","dependencies_parsed_at":"2023-03-15T23:30:51.529Z","dependency_job_id":null,"html_url":"https://github.com/dmis-lab/bioasq9b-dmis","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dmis-lab%2Fbioasq9b-dmis","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dmis-lab%2Fbioasq9b-dmis/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dmis-lab%2Fbioasq9b-dmis/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dmis-lab%2Fbioasq9b-dmis/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dmis-lab","download_url":"https://codeload.github.com/dmis-lab/bioasq9b-dmis/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243955725,"owners_count":20374372,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-23T01:42:06.106Z","updated_at":"2025-03-17T00:43:18.863Z","avatar_url":"https://github.com/dmis-lab.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"## KU-DMIS at BioASQ 9: Data-centric and model-centric approaches for biomedical question answering\r\n\r\nThis repository provides supplimentary data for our participation in the 9th BioASQ challenge. \r\nThe annotation (Data-centric approach) on the training dataset of the BioASQ Challenge 8b is provided as TSV/MS excel format with example code to read the data.\r\nSource code and models for factoid and yesno questions are available on the repogitory for our previous participations (7th and 8th; please see Quick Links section).\r\n\r\n\r\n### Quick Links\r\nLink | Detail\r\n------------- | -------------\r\n[8th BioASQ](https://github.com/dmis-lab/bioasq8b) | Code and resources for the eighth BioASQ challenge winning model (factoid/yesno/list)\r\n[7th BioASQ](https://github.com/dmis-lab/bioasq-biobert) | Code resources for the seventh BioASQ challenge winning model (factoid/yesno/list)\r\n[BioBERT-PyTorch](https://github.com/dmis-lab/biobert-pytorch) | PyTorch-based BioBERT implementation\r\n[BioBERT](https://github.com/dmis-lab/biobert) | BioBERT \r\n[BERN](https://bern.korea.ac.kr) | Web-based biomedical NER + normalization using BioBERT\r\n\r\n\r\n\r\n### Datasets\r\nWe provide pre-processed version of BioASQ 8b - Phase B datasets for each task as follows:\r\n*   **[`BioASQ 8b`](https://drive.google.com/file/d/1THaDKpoiVRWvJjH9d0LZYakzVoBHKMI1/view?usp=sharing)** (23 MB) \r\n\r\nDue to the copyright issue, we can not provide golden answers for BioASQ test dataset. \r\nTo use BioASQ datasets, you should register in [BioASQ website](http://participants-area.bioasq.org). \r\n\r\nFor details on the datasets, please see **An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition (Tsatsaronis et al. 2015)**.\r\n\r\n\r\n### License and Disclaimer\r\nPlease see and agree `LICENSE` file for details. Downloading data indicates your acceptance of our disclaimer.\r\n\r\n\r\n### Contact information\r\n\r\nFor help or issues using our model, please contact Wonjin Yoon (`wonjin.info {at} gmail.com`) for communication related to the paper.\r\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdmis-lab%2Fbioasq9b-dmis","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdmis-lab%2Fbioasq9b-dmis","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdmis-lab%2Fbioasq9b-dmis/lists"}