{"id":13848124,"url":"https://github.com/dogsheep/genome-to-sqlite","last_synced_at":"2025-04-10T02:15:12.456Z","repository":{"id":57433646,"uuid":"209590345","full_name":"dogsheep/genome-to-sqlite","owner":"dogsheep","description":"Import your genome into a SQLite database","archived":false,"fork":false,"pushed_at":"2019-09-19T15:41:17.000Z","size":9,"stargazers_count":21,"open_issues_count":2,"forks_count":1,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-04-10T02:15:00.673Z","etag":null,"topics":["23andme","datasette","datasette-io","datasette-tool","dogsheep","genetics","personal-analytics","sqlite"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dogsheep.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2019-09-19T15:38:39.000Z","updated_at":"2024-08-23T16:15:52.000Z","dependencies_parsed_at":"2022-08-28T04:41:51.081Z","dependency_job_id":null,"html_url":"https://github.com/dogsheep/genome-to-sqlite","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dogsheep%2Fgenome-to-sqlite","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dogsheep%2Fgenome-to-sqlite/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dogsheep%2Fgenome-to-sqlite/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dogsheep%2Fgenome-to-sqlite/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dogsheep","download_url":"https://codeload.github.com/dogsheep/genome-to-sqlite/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248142902,"owners_count":21054671,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["23andme","datasette","datasette-io","datasette-tool","dogsheep","genetics","personal-analytics","sqlite"],"created_at":"2024-08-04T19:00:42.383Z","updated_at":"2025-04-10T02:15:12.437Z","avatar_url":"https://github.com/dogsheep.png","language":"Python","funding_links":[],"categories":["Uncategorized"],"sub_categories":["Uncategorized"],"readme":"# genome-to-sqlite\n\n[![PyPI](https://img.shields.io/pypi/v/genome-to-sqlite.svg)](https://pypi.org/project/genome-to-sqlite/)\n[![CircleCI](https://circleci.com/gh/dogsheep/genome-to-sqlite.svg?style=svg)](https://circleci.com/gh/dogsheep/genome-to-sqlite)\n[![License](https://img.shields.io/badge/license-Apache%202.0-blue.svg)](https://github.com/dogsheep/genome-to-sqlite/blob/master/LICENSE)\n\nImport your genome into a SQLite database.\n\n## How to install\n\n    $ pip install genome-to-sqlite\n\n## How to use\n\nFirst, export your genome. This tool has only been tested against 23andMe so far. You can request an export of your genome from https://you.23andme.com/tools/data/download/\n\nNow you can convert the resulting `export.zip` file to SQLite like so:\n\n    $ genome-to-sqlite export.zip genome.db\n\nA progress bar will be displayed. You can disable this using `--silent`.\n\n```\nImporting genome  [#----------------]    5%  00:01:33\n```\n\nYou can explore the resulting data using [Datasette](https://datasette.readthedocs.io/) like this:\n\n    $ datasette genome.db --config facet_time_limit_ms:1000\n\nBumping up the facet time limit is useful in order to enable faceting by chromosome:\n\nhttp://127.0.0.1:8001/genome/genome?_facet=chromosome\u0026_sort=position\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdogsheep%2Fgenome-to-sqlite","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdogsheep%2Fgenome-to-sqlite","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdogsheep%2Fgenome-to-sqlite/lists"}