{"id":17844817,"url":"https://github.com/dombennett/treeman","last_synced_at":"2026-02-28T17:04:17.880Z","repository":{"id":56544324,"uuid":"47271462","full_name":"DomBennett/treeman","owner":"DomBennett","description":":deciduous_tree::man: An R package for manipulating phylogentic trees","archived":false,"fork":false,"pushed_at":"2020-11-01T19:49:45.000Z","size":5112,"stargazers_count":11,"open_issues_count":1,"forks_count":2,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-09-21T16:42:41.582Z","etag":null,"topics":["bioinformatics","cran","evolution","phylogenetic-trees"],"latest_commit_sha":null,"homepage":"https://github.com/DomBennett/treeman/wiki","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/DomBennett.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-12-02T15:52:07.000Z","updated_at":"2024-02-26T19:43:58.000Z","dependencies_parsed_at":"2022-08-15T20:40:31.433Z","dependency_job_id":null,"html_url":"https://github.com/DomBennett/treeman","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/DomBennett/treeman","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DomBennett%2Ftreeman","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DomBennett%2Ftreeman/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DomBennett%2Ftreeman/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DomBennett%2Ftreeman/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DomBennett","download_url":"https://codeload.github.com/DomBennett/treeman/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DomBennett%2Ftreeman/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29943688,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-28T13:49:17.081Z","status":"ssl_error","status_checked_at":"2026-02-28T13:48:50.396Z","response_time":90,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","cran","evolution","phylogenetic-trees"],"created_at":"2024-10-27T21:33:08.590Z","updated_at":"2026-02-28T17:04:17.856Z","avatar_url":"https://github.com/DomBennett.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# treeman\n[![Build Status](https://travis-ci.org/DomBennett/treeman.svg)](https://travis-ci.org/DomBennett/treeman)[![Coverage Status](https://coveralls.io/repos/DomBennett/treeman/badge.svg?branch=master\u0026service=github)](https://coveralls.io/github/DomBennett/treeman?branch=master)[![CRAN downloads](http://cranlogs.r-pkg.org/badges/grand-total/treeman)](https://CRAN.R-project.org/package=treeman)[![Rdoc](http://www.rdocumentation.org/badges/version/treeman)](http://www.rdocumentation.org/packages/treeman) \n\n\u003e An R package for manipulating phylogentic trees using an intuitive S4 class structure.\n\nThe `treeman` R package provides a `list` based class for encoding phylogenetic trees in R, making manipulating phylogenetic trees easier to code and more efficient to run. `treeman` is aimed to be fast, simple and intuitive.\n\n**Installation**\n\nWith CRAN:\n\n```r\ninstall.packages('treeman')\n```\n\nInstalling the development copy via GitHub\n```r\nlibrary(devtools)\ninstall_github('dombennett/treeman')\n```\n\n**Quick guide**\n\n```r\n# working with the TreeMan class\nlibrary(treeman)\n?TreeMan  # check the documentation\ntree \u003c- randTree(10)  # generate a random tree of 10 tips\nsummary(tree)  # check key stats\ntree[\"tips\"]  # extract key stats\n```\n\nFor more details check out the [wiki](https://github.com/DomBennett/treeman/wiki).\n\n**Licence**\n\nGPL-2\n\n**Status**\n\nVersion 1.1 released.\n\n**Reference**\n\nBennett, D.J., Sutton, M.D. \u0026 Turvey, S.T., 2017. treeman: an R package for efficient and intuitive manipulation of phylogenetic trees. *BMC Research Notes*, 10(1), p.30. [Available online](https://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-016-2340-8)\n\n**Author**\n\nD.J. Bennett (*but I welcome pull requests!*)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdombennett%2Ftreeman","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdombennett%2Ftreeman","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdombennett%2Ftreeman/lists"}