{"id":15253711,"url":"https://github.com/dpploy/cortix","last_synced_at":"2025-04-11T14:40:37.044Z","repository":{"id":32979623,"uuid":"126546822","full_name":"dpploy/cortix","owner":"dpploy","description":"Cortix is a Python library for network dynamics modeling and HPC simulation.","archived":false,"fork":false,"pushed_at":"2025-02-13T16:20:27.000Z","size":9253,"stargazers_count":11,"open_issues_count":9,"forks_count":4,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-03-25T10:42:49.605Z","etag":null,"topics":["computational-mathematics","coupled-data","dynamical-systems","engineering","engineering-science","parallel-computing","pypi","pypi-package","python-3","science","scientific-computing","scipy","simulation-modeling"],"latest_commit_sha":null,"homepage":"https://cortix.org","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dpploy.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-03-23T22:58:53.000Z","updated_at":"2025-02-12T07:35:38.000Z","dependencies_parsed_at":"2024-09-29T22:00:56.143Z","dependency_job_id":"966cb36e-0e45-440c-93ad-98fa16031ef7","html_url":"https://github.com/dpploy/cortix","commit_stats":{"total_commits":1239,"total_committers":12,"mean_commits":103.25,"dds":"0.46731234866828086","last_synced_commit":"960ab046beaed90057f6b50a61f02a3c753a5add"},"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dpploy%2Fcortix","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dpploy%2Fcortix/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dpploy%2Fcortix/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dpploy%2Fcortix/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dpploy","download_url":"https://codeload.github.com/dpploy/cortix/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248420137,"owners_count":21100320,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["computational-mathematics","coupled-data","dynamical-systems","engineering","engineering-science","parallel-computing","pypi","pypi-package","python-3","science","scientific-computing","scipy","simulation-modeling"],"created_at":"2024-09-29T22:00:49.533Z","updated_at":"2025-04-11T14:40:37.024Z","avatar_url":"https://github.com/dpploy.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Cortix\nA Python library for network dynamics modeling and HPC simulation.\n  + [Cortix on Jupyter notebook examples](https://github.com/dpploy/cortix-nb)\n  + [Documentation on the web](https://cortix.org)\n\n![Website](https://img.shields.io/website/https/github.com/dpploy/cortix.svg)\n[![Repo Size](https://img.shields.io/github/repo-size/dpploy/cortix.svg?style=flat)](https://cortix.org)\n[![PyPI version](https://badge.fury.io/py/cortix.svg)](https://badge.fury.io/py/cortix)\n[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/Django.svg)](https://badge.fury.io/py/cortix)\n\n[![codecov](https://codecov.io/gh/dpploy/cortix/branch/master/graph/badge.svg)](https://codecov.io/gh/dpploy/cortix)\n\n![](cortix/docs/cortix-cover.png)\n\n## What is Cortix?\n\n* Cortix is a massively parallel Python library for system-level module coupling, execution, and\n  analysis of dynamical system models that exchange time-dependent data.\n* Cortix takes as input a collection of computational modules and provides an \n  environment for the coupling of these modules into a single simulation.\n* Cortix supports:\n    - Module decoupling\n    - Communication between modules\n    - Data visualization\n* Cortix runs on top of [MPI](https://www.open-mpi.org/) and scales across many cores.\n\n\n## Installation: start by installing [MPI](https://www.open-mpi.org/)\n\n## Installing via PyPI\n```\npip install --user cortix\n```\nif updating to a new version, you may need to specify the version\n```\npip install --user cortix==\"\u003cversion\u003e\"\n```\nNB: this will not install the GraphViz executables but only the python wrapper. Install the GraphViz library on your system by yourself.\n## Installing via Conda\nIn a `Anaconda` environment (MacOS terminal conda, or Windows Anaconda powershell) do:\n```\npip install cortix\nconda install graphviz\n```\nif updating to a new version, you may need to specify the version\n```\npip install cortix==\"\u003cversion\u003e\"\n```\n## Installing from source\n1. Clone this repository to install the latest version of Cortix \n```\ngit clone https://github.com/dpploy/cortix.git\n```\n2. Install the required dependencies listed in `requirements.txt`\n```\npip install --user -r cortix/requirements.txt\n```\n3. Add ```cortix```'s parent path to your ```$PYTHONPATH``` variable\n```\nexport PYTHONPATH=$PYTHONPATH:$(pwd)\n```\nNote: you may want to add this line to your ```.bashrc``` in order for it to be persistent\n\n### Verify your Cortix install by running the Droplet example\n```\nmpiexec -n xx examples/run_droplet_swirl.py\n```\nwhere xx is the number of MPI processes which must match the number of modules plus 1. If there are\n10 droplets and 1 vortex, use $xx = 12$.\n\n## Testing\n\nTesting is facilitated by [PyTest](http://pytest.org). Tests can be run locally from within the `tests` directory\n```\ncd tests \u0026\u0026 py.test\n```\n\n## Using Cortix\n\nPlease refer to the [documentation](https://cortix.org/contents.html) for more on getting started!\n\n## Team \n\n- Valmor F. de Almeida: valmor\\_dealmeida@uml.edu\n- Taha M. Azzaoui: tazzaoui@cs.uml.edu\n- Seamus D. Gallagher: seamus\\_gallagher@student.uml.edu\n- Austin Rotker: austin_rotker@student.uml.edu\n- Gilberto E. Alas: gilberto\\_alas@student.uml.edu\n\n## Contributing\n\nPull requests are welcome. For major changes, please open an [issue](https://github.com/dpploy/cortix/issues) first to discuss what you would like to change.\n\nPlease make sure to update tests as appropriate.\n\n## Location \n\nCortix Group\n\nc/o [UMass Innovation Hub](https://www.uml.edu/Innovation-Hub/)\n\n110 Canal St., 3rd Floor\n\nLowell, MA  01852\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdpploy%2Fcortix","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdpploy%2Fcortix","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdpploy%2Fcortix/lists"}