{"id":22368000,"url":"https://github.com/dridk/abif","last_synced_at":"2026-01-06T00:49:44.223Z","repository":{"id":31439700,"uuid":"35003343","full_name":"dridk/abif","owner":"dridk","description":"Command line tool to read Applied Biosystems Genetic Analysis  Data File Format","archived":false,"fork":false,"pushed_at":"2020-07-15T20:19:25.000Z","size":8,"stargazers_count":6,"open_issues_count":1,"forks_count":2,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-01-31T17:52:41.985Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"QMake","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dridk.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-05-03T22:42:58.000Z","updated_at":"2023-04-14T19:09:37.000Z","dependencies_parsed_at":"2022-08-03T15:17:59.674Z","dependency_job_id":null,"html_url":"https://github.com/dridk/abif","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dridk%2Fabif","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dridk%2Fabif/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dridk%2Fabif/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dridk%2Fabif/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dridk","download_url":"https://codeload.github.com/dridk/abif/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245689509,"owners_count":20656417,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-04T18:25:35.277Z","updated_at":"2026-01-06T00:49:44.192Z","avatar_url":"https://github.com/dridk.png","language":"QMake","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Abif\nA command line tool to read Applied Biosystems Genetic Analysis Data File Format.\n\nA command line tool to read [ABIF file](http://www6.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf) for Genetic Analysis. This application can read *.ab1 and *.fsa file . \n\n# Compilation \nAbif is a C++11 application.\nTCLAP is the only one depedency.\n\n    sudo apt-get install libtclap-dev.\n\n# Compilation\n\n    make\n    ./abif --version\n\n# Howto \n## Display all keys \n\n    abif -l example.fsa\n    \n    NAME    NUMBER  ELEMENT TYPE    ELEMENT SIZE    NUM ELEMENTS    DATA SIZE       DATA OFFSET     DATA HANDLE\n    CTID.1  1       19      1       22      22      75479   0\n    CTNM.1  1       19      1       22      22      75501   0\n    CTOw.1  1       19      1       3       3       1936392192      0\n\n  \n## Display value from key\n\n    abif -k DATA.1 example.fsa \n    \n    0,2,-4,2,-1,-6,-3,0,-3,-2,-1,-1,-2,-3,-8,-2,-4,3,0,1,0,0,-3,0,3,-4,-1,-1,-4,-4,-2,-3,-2,1,-1,-2,-3,-5,0,0,0,-2,-4,-2,0,-2,-3,0,-8,-2,-1,-2,-6,-2,-4,2,-2,2,-6,0,-5,-4,-3,1,-6,0,-3,-3,-3,-4,-2,-5,-1,-5,-4,-2,-3,-1,-3,-6,-4,-5,-6,-3,-1,-3,-3,-1,-2,-4,-3,-1,-2,-3,-7,-5,0,-4,-3,-1,-4,-6,-5,-9,-6,-2,-3,-7,-3,-6,-9,-8,-3,-3,-4,-7,-3,-8,-3,-7,-1,-4,-6,-4,-5,0,-4,-2,0,-3,-1,-3,-9,-3,-4,-2,-7,-8,-4,-5,-3,-7,1,-5,0,-4,-9,-6,-9,0,-6,-4,-6,-4,-9,-8,-6,-9,-6,-4,-5,0,-3,-4,-5,-7,-4,0,-6,-2,-3,-6,-4,-4,-6,-3,-6,-6,-4,-3,-2,-8,-5,-7,-5,-5,-4,-4,-2,-8,-10,-3,-2,-2,-4,-5,-3,-6,-8,-3,-9,-5,-7,-6,-10,-8,-8,-4,-4,-2,-5,-5,-4,-10,-1,-8,-6,-7,-6,-4,-3,-4,-8,-1,-4,-4,-4,-5,-3,-4,-6,-3,0,-6,-5,-4,-5,-6,-4,-1,-6,-5,-4,-9,-3,-4,-5,-5,-4,-4,-3,-7 ...\n    \n## Plot trace with gnuplot \n\n     ./abif -k DATA.1 ../CutePeaks/examples/A_forward.ab1 | tr \",\" \"\\n\"|gnuplot -p -e 'plot \"/dev/stdin\" using 0:1 with lines'\n\n\n\n\n\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdridk%2Fabif","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdridk%2Fabif","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdridk%2Fabif/lists"}