{"id":19629381,"url":"https://github.com/drisso/my_workshop","last_synced_at":"2026-03-01T23:02:17.048Z","repository":{"id":89938014,"uuid":"315571377","full_name":"drisso/my_workshop","owner":"drisso","description":null,"archived":false,"fork":false,"pushed_at":"2020-11-24T08:48:42.000Z","size":189,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-02-26T20:29:51.510Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Dockerfile","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/drisso.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-11-24T08:48:38.000Z","updated_at":"2020-11-24T08:48:46.000Z","dependencies_parsed_at":"2023-04-03T13:08:14.454Z","dependency_job_id":null,"html_url":"https://github.com/drisso/my_workshop","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":"Bioconductor/BuildABiocWorkshop","purl":"pkg:github/drisso/my_workshop","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drisso%2Fmy_workshop","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drisso%2Fmy_workshop/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drisso%2Fmy_workshop/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drisso%2Fmy_workshop/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/drisso","download_url":"https://codeload.github.com/drisso/my_workshop/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drisso%2Fmy_workshop/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29987654,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-01T22:42:38.399Z","status":"ssl_error","status_checked_at":"2026-03-01T22:41:51.863Z","response_time":124,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-11T11:58:42.968Z","updated_at":"2026-03-01T23:02:17.032Z","avatar_url":"https://github.com/drisso.png","language":"Dockerfile","funding_links":[],"categories":[],"sub_categories":[],"readme":"# BuildABiocWorkshop2020\n\nThis package is a template for building a Bioconductor 2020 workshop. The package\nincludes Github actions to:\n\n1. Set up bioconductor/bioconductor_docker:devel on Github resources\n2. Install package dependencies for your package (based on the `DESCRIPTION` file)\n3. Run `rcmdcheck::rcmdcheck`\n4. Build a pkgdown website and push it to github pages\n5. Build a docker image with the installed package and dependencies\n\n## Responsibilities\n\nThis year, package authors will be primarily responsible for:\n\n1. Creating a landing site of their choosing for their workshops (a website). This website should be listed in the `DESCRIPTION` file as the `URL`.\n2. Creating a docker account and image that will contain workshop materials and the installed packages necessary to run those materials. The name of the resulting docker image, including \"tag\" if desired, should be listed in a non-standard tag, `DockerImage:` in the `DESCRIPTION` file. \n\nBoth of those tasks can be accomplished using the Github actions included in this template package. The vignette accompanying this package describes how to accomplish both of these tasks.\n\n## Details\n\nFor detailed instructions, see the `How to build a workshop` article/vignette.\n\n## Results of successful deployment\n\n- A working docker image that contains the installed package and dependencies.\n- An up-to-date `pkgdown` website at https://YOURUSERNAME.github.io/YOURREPOSITORYNAME/\n- Docker image will be tagged with `latest`, `sha-XXXXXX` where `XXXXXX` is the hash of the current `master` commit, and `master`. \n\n## To use the resulting image:\n\n```sh\ndocker run -e PASSWORD=\u003cchoose_a_password_for_rstudio\u003e -p 8787:8787 YOURDOCKERIMAGENAME\n```\nOnce running, navigate to https://localhost:8787/ and then login with `rstudio`:`yourchosenpassword`. \n\nTo try with **this** repository docker image:\n\n```sh\ndocker run -e PASSWORD=abc -p 8787:8787 seandavi/buildabiocworkshop2020\n```\n\n*NOTE*: Running docker that uses the password in plain text like above exposes the password to others \nin a multi-user system (like a shared workstation or compute node). In practice, consider using an environment \nvariable instead of plain text to pass along passwords and other secrets in docker command lines. \n\n\n## Whatcha get\n\nhttps://seandavi.github.io/BuildABiocWorkshop2020\n\n![dockerhub](https://github.com/seandavi/BuildABiocWorkshop2020/raw/master/inst/images/dockerhub_result.png)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdrisso%2Fmy_workshop","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdrisso%2Fmy_workshop","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdrisso%2Fmy_workshop/lists"}