{"id":19629405,"url":"https://github.com/drisso/peixoto2015_tutorial","last_synced_at":"2025-02-26T20:25:05.656Z","repository":{"id":33055671,"uuid":"36692083","full_name":"drisso/peixoto2015_tutorial","owner":"drisso","description":"Tutorial to reproduce the analysis of Peixoto et al. (2015)","archived":false,"fork":false,"pushed_at":"2015-11-25T19:09:38.000Z","size":26970,"stargazers_count":9,"open_issues_count":0,"forks_count":11,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-01-09T14:13:02.973Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/drisso.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-06-01T22:13:21.000Z","updated_at":"2024-11-20T15:37:11.000Z","dependencies_parsed_at":"2022-08-24T14:23:24.227Z","dependency_job_id":null,"html_url":"https://github.com/drisso/peixoto2015_tutorial","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drisso%2Fpeixoto2015_tutorial","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drisso%2Fpeixoto2015_tutorial/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drisso%2Fpeixoto2015_tutorial/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drisso%2Fpeixoto2015_tutorial/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/drisso","download_url":"https://codeload.github.com/drisso/peixoto2015_tutorial/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240928010,"owners_count":19880029,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-11T11:58:49.240Z","updated_at":"2025-02-26T20:25:05.625Z","avatar_url":"https://github.com/drisso.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Tutorial to reproduce the analysis of [Peixoto et al. (2015)](https://nar.oxfordjournals.org/content/43/16/7664.full)\n\n### Analysis of FC and OLM datasets\n\nAll the needed input files are in the [Peixoto_Input_for_Additional_file_1](Peixoto_Input_for_Additional_file_1) directory.\n\nThis tutorial has been tested with R 3.2.0.\n\n[Peixoto_Additional_File_1.Rmd](Peixoto_Additional_File_1.Rmd) contains the Rmarkdown and can be run to reproduce the full report.\n\n[Peixoto_Additional_File_1.R](Peixoto_Additional_File_1.R) contains a pure R script and can be sourced to any R session.\n\n[Peixoto_Additional_File_1.html](Peixoto_Additional_File_1.html) and [Peixoto_Additional_File_1.pdf](Peixoto_Additional_File_1.pdf) contain the results of the analysis. Please refer to the Section \"Session Info\" for details on the package versions used.\n\n### Analysis of publicly available data\n\nThe processed expression data from GEO are available in the [Peixoto_Input_for_Additional_file_2](Peixoto_Input_for_Additional_file_2) directory.\n\n[Peixoto_Additional_File_2.Rmd](Peixoto_Additional_File_2.Rmd) contains the Rmarkdown and can be run to reproduce the analysis.\n\n[Peixoto_Additional_File_2.html](Peixoto_Additional_File_2.html) contains the results.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdrisso%2Fpeixoto2015_tutorial","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdrisso%2Fpeixoto2015_tutorial","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdrisso%2Fpeixoto2015_tutorial/lists"}