{"id":25360799,"url":"https://github.com/drseb/negation-ontology","last_synced_at":"2026-01-22T18:05:01.985Z","repository":{"id":95225740,"uuid":"162550817","full_name":"drseb/negation-ontology","owner":"drseb","description":null,"archived":false,"fork":false,"pushed_at":"2018-12-20T09:35:42.000Z","size":77,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"master","last_synced_at":"2025-04-09T03:35:40.502Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Makefile","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/drseb.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-12-20T08:40:18.000Z","updated_at":"2018-12-20T12:48:42.000Z","dependencies_parsed_at":null,"dependency_job_id":"d2013be5-8178-4059-b4af-fd839d9069a8","html_url":"https://github.com/drseb/negation-ontology","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/drseb/negation-ontology","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drseb%2Fnegation-ontology","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drseb%2Fnegation-ontology/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drseb%2Fnegation-ontology/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drseb%2Fnegation-ontology/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/drseb","download_url":"https://codeload.github.com/drseb/negation-ontology/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/drseb%2Fnegation-ontology/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28667881,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-22T17:07:18.858Z","status":"ssl_error","status_checked_at":"2026-01-22T17:05:02.040Z","response_time":144,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-02-14T21:55:48.660Z","updated_at":"2026-01-22T18:05:01.970Z","avatar_url":"https://github.com/drseb.png","language":"Makefile","funding_links":[],"categories":[],"sub_categories":[],"readme":"\n\u003c!-- [![Build Status](https://travis-ci.org/drseb/negation-ontology.svg?branch=master)](https://travis-ci.org/drseb/negation-ontology) --\u003e\n\n\u003c!-- [![DOI](https://zenodo.org/badge/13996/drseb/negation-ontology.svg)](https://zenodo.org/badge/latestdoi/13996/drseb/negation-ontology) --\u003e\n\n\n# negation-ontology\n\nThis ontology will be used to represent negated associations between any biomedical items (knockout-mice, diseases, patients, morpholinos, ...) and phenotype ontology classes.\n\nAssociations between a gene or a disease with terms from phenotype ontologies or gene ontologies are sometimes negated. This means the intended meaning is that this association is actually NOT seen. \nCurrently we only used the keyword “NOT”. But as discussed on previous calls, there are different semantics of this “NOT”. This ontology should be a first pass at representing this for annotation files in different species.\n\n## Versions\n\n### Stable release versions\n\nThe latest version of the ontology can always be found at:\n\nhttp://purl.obolibrary.org/obo/not.owl\n\n(note this will not show up until the request has been approved by obofoundry.org)\n\n### Editors' version\n\nEditors of this ontology should use the edit version, [src/ontology/not-edit.owl](src/ontology/not-edit.owl)\n\n## Contact\n\nPlease use this GitHub repository's [Issue tracker](https://github.com/drseb/negation-ontology/issues) to request new terms/classes or report errors or specific concerns related to the ontology.\n\n## Acknowledgements\n\nThis ontology repository was created using the [ontology starter kit](https://github.com/INCATools/ontology-starter-kit)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdrseb%2Fnegation-ontology","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdrseb%2Fnegation-ontology","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdrseb%2Fnegation-ontology/lists"}