{"id":14068352,"url":"https://github.com/dynverse/dynguidelines","last_synced_at":"2025-12-24T09:47:47.322Z","repository":{"id":93751210,"uuid":"129725141","full_name":"dynverse/dynguidelines","owner":"dynverse","description":"Selecting the optimal trajectory inference based on a given dataset and user input 🔮","archived":false,"fork":false,"pushed_at":"2020-06-29T13:32:29.000Z","size":39806,"stargazers_count":17,"open_issues_count":10,"forks_count":7,"subscribers_count":2,"default_branch":"master","last_synced_at":"2024-08-13T07:14:41.182Z","etag":null,"topics":["shiny","trajectory-inference"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dynverse.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-04-16T10:22:25.000Z","updated_at":"2024-07-30T14:16:23.000Z","dependencies_parsed_at":"2023-03-11T05:45:17.470Z","dependency_job_id":null,"html_url":"https://github.com/dynverse/dynguidelines","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dynverse%2Fdynguidelines","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dynverse%2Fdynguidelines/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dynverse%2Fdynguidelines/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dynverse%2Fdynguidelines/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dynverse","download_url":"https://codeload.github.com/dynverse/dynguidelines/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":228082268,"owners_count":17866600,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["shiny","trajectory-inference"],"created_at":"2024-08-13T07:06:06.926Z","updated_at":"2025-12-24T09:47:47.309Z","avatar_url":"https://github.com/dynverse.png","language":"R","funding_links":[],"categories":["R"],"sub_categories":[],"readme":"---\noutput: github_document\neditor_options: \n  chunk_output_type: console\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, echo = FALSE, message = FALSE, error = FALSE, warning = FALSE}\nlibrary(tidyverse)\n```\n\n\u003c!-- badges: start --\u003e\n[![R build status](https://github.com/dynverse/dynguidelines/workflows/R-CMD-check/badge.svg)](https://github.com/dynverse/dynguidelines/actions)\n[![codecov](https://codecov.io/gh/dynverse/dynguidelines/branch/master/graph/badge.svg)](https://codecov.io/gh/dynverse/dynguidelines) \n\u003cimg src=\"man/figures/logo.png\" align=\"right\" width=\"150px\" /\u003e\n\u003c!-- badges: end --\u003e\n\n# Selecting the most optimal TI methods\n\nThis package summarises the results from the [dynbenchmark](https://www.github.com/dynverse/dynbenchmark) evaluation of trajectory inference methods. Both programmatically and through a (shiny) app, users can select the most optimal set of methods given a set of user and dataset specific parameters.\n\nInstalling the app:\n```{r eval=FALSE}\n# install.packages(\"devtools\")\ndevtools::install_github(\"dynverse/dynguidelines\")\n```\n\nRunning the app:\n```{r eval=FALSE}\ndynguidelines::guidelines_shiny()\n```\n\nSee [dyno](https://www.github.com/dynverse/dyno) for more information on how to use this package to infer and interpret trajectories.\n\n\u003c!-- This gif was recorded using peek (https://github.com/phw/peek) ---\u003e\n![demo](man/figures/demo.gif)\n\n## Latest changes\nCheck out `news(package = \"dynguidelines\")` or [NEWS.md](NEWS.md) for a full list of changes.\n\n\u003c!-- This section gets automatically generated from NEWS.md --\u003e\n\n```{r news, echo=FALSE, results=\"asis\"}\ncat(dynutils::recent_news())\n```\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdynverse%2Fdynguidelines","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdynverse%2Fdynguidelines","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdynverse%2Fdynguidelines/lists"}