{"id":32111424,"url":"https://github.com/dzhang32/dasper","last_synced_at":"2026-02-21T19:33:51.760Z","repository":{"id":110029902,"uuid":"245168125","full_name":"dzhang32/dasper","owner":"dzhang32","description":"Detecting Aberrant Splicing Events from RNA-sequencing data","archived":false,"fork":false,"pushed_at":"2024-12-10T20:45:59.000Z","size":36303,"stargazers_count":16,"open_issues_count":5,"forks_count":3,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-09-08T12:45:57.383Z","etag":null,"topics":["diagnostics","rare-disease","rna-seq-analysis","splicing"],"latest_commit_sha":null,"homepage":"https://dzhang32.github.io/dasper/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dzhang32.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":null,"code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":".github/SUPPORT.md","governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2020-03-05T13:18:19.000Z","updated_at":"2024-12-10T20:46:03.000Z","dependencies_parsed_at":"2025-09-08T12:29:33.525Z","dependency_job_id":"96651449-dba0-42d8-89ea-13511da53089","html_url":"https://github.com/dzhang32/dasper","commit_stats":{"total_commits":334,"total_committers":6,"mean_commits":"55.666666666666664","dds":0.2455089820359282,"last_synced_commit":"ec5f82ad8c667215cf976dc701c39be98a993851"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/dzhang32/dasper","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dzhang32%2Fdasper","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dzhang32%2Fdasper/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dzhang32%2Fdasper/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dzhang32%2Fdasper/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dzhang32","download_url":"https://codeload.github.com/dzhang32/dasper/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dzhang32%2Fdasper/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29691045,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-21T18:18:25.093Z","status":"ssl_error","status_checked_at":"2026-02-21T18:18:22.435Z","response_time":107,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["diagnostics","rare-disease","rna-seq-analysis","splicing"],"created_at":"2025-10-20T14:28:48.066Z","updated_at":"2026-02-21T19:33:51.755Z","avatar_url":"https://github.com/dzhang32.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, include = FALSE}\nknitr::opts_chunk$set(\n    collapse = TRUE,\n    comment = \"#\u003e\",\n    fig.path = \"man/figures/README-\",\n    out.width = \"100%\"\n)\n```\n\n# dasper\n\n\u003c!-- badges: start --\u003e\n[![Lifecycle: maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing)\n[![R build status](https://github.com/dzhang32/dasper/actions/workflows/check-bioc.yml/badge.svg)](https://github.com/dzhang32/dasper/actions/workflows/check-bioc.yml)\n[![Codecov test coverage](https://codecov.io/gh/dzhang32/dasper/branch/master/graph/badge.svg)](https://codecov.io/gh/dzhang32/dasper?branch=master)\n[![BioC status](http://www.bioconductor.org/shields/build/release/bioc/dasper.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/dasper)\n[![DOI](https://zenodo.org/badge/245168125.svg)](https://zenodo.org/badge/latestdoi/245168125)\n\u003c!-- badges: end --\u003e\n\nThe aim of `dasper` is to **d**etect **a**berrant **sp**licing **e**vents from **R**NA-seq data. By comparing patient RNA-seq data to a set of controls, `dasper` will score each splicing event in the patient representing the degree to which that splicing event looks abnormal. For a detailed guide on the usage of `dasper`, check out the vignette [here](https://dzhang32.github.io/dasper/articles/dasper.html). \n\n## Installation instructions\n\nGet the latest stable `R` release from [CRAN](http://cran.r-project.org/). Then install `dasper` from [Bioconductor](http://bioconductor.org/) using the following code:\n\n```{r 'install', eval = FALSE}\nif (!requireNamespace(\"BiocManager\", quietly = TRUE)) {\n    install.packages(\"BiocManager\")\n}\n\nBiocManager::install(\"dasper\")\n```\n\nAnd the development version from [GitHub](https://github.com/) with:\n\n```{r 'install_dev', eval = FALSE}\nBiocManager::install(\"dzhang32/dasper\")\n```\n\n## Citation\n\nBelow is the citation output from using `citation('dasper')` in R. Please\nrun this yourself to check for any updates on how to cite __dasper__.\n\n```{r 'citation', eval = requireNamespace('dasper')}\nprint(citation(\"dasper\"), bibtex = TRUE)\n```\n\nPlease note that the `dasper` was only made possible thanks to many other R and bioinformatics software authors, which are cited either in the vignettes and/or the paper(s) describing this package.\n\n## Code of Conduct\n\nPlease note that the `dasper` project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.\n\n## Development tools\n\n* Continuous code testing is possible thanks to [GitHub actions](https://www.tidyverse.org/blog/2020/04/usethis-1-6-0/)  through `r BiocStyle::CRANpkg('usethis')`, `r BiocStyle::CRANpkg('remotes')`, `r BiocStyle::Githubpkg('r-hub/sysreqs')` and `r BiocStyle::CRANpkg('rcmdcheck')` customized to use [Bioconductor's docker containers](https://www.bioconductor.org/help/docker/) and `r BiocStyle::Biocpkg('BiocCheck')`.\n* Code coverage assessment is possible thanks to [codecov](https://codecov.io/gh) and `r BiocStyle::CRANpkg('covr')`.\n* The [documentation website](http://dzhang32.github.io/dasper) is automatically updated thanks to `r BiocStyle::CRANpkg('pkgdown')`.\n* The code is styled automatically thanks to `r BiocStyle::CRANpkg('styler')`.\n* The documentation is formatted thanks to `r BiocStyle::CRANpkg('devtools')` and `r BiocStyle::CRANpkg('roxygen2')`.\n\nFor more details, check the `dev` directory.\n\nIn particular, I am very grateful to [Leo](http://lcolladotor.github.io/) for his time and advice throughout the development of `dasper`. The transition of `dasper` Bioconductor-friendly package was made possible thanks to his `r BiocStyle::Biocpkg('biocthis')` package. \n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdzhang32%2Fdasper","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fdzhang32%2Fdasper","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fdzhang32%2Fdasper/lists"}