{"id":18758678,"url":"https://github.com/eeeeeric/rsalvador","last_synced_at":"2025-04-13T02:23:29.979Z","repository":{"id":16231159,"uuid":"18978658","full_name":"eeeeeric/rSalvador","owner":"eeeeeric","description":"rSalvador: An R Tool for the Luria-Delbruck Fluctuation Assay","archived":false,"fork":false,"pushed_at":"2023-11-24T21:21:07.000Z","size":4654,"stargazers_count":7,"open_issues_count":3,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-03-10T06:06:42.418Z","etag":null,"topics":["luria-delbruck","r"],"latest_commit_sha":null,"homepage":"https://eeeeeric.com/rSalvador/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/eeeeeric.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2014-04-21T01:46:20.000Z","updated_at":"2024-08-08T18:13:32.000Z","dependencies_parsed_at":"2023-01-11T20:24:43.310Z","dependency_job_id":"1f1fd7b7-59be-4224-ad28-21b65a28cd5f","html_url":"https://github.com/eeeeeric/rSalvador","commit_stats":null,"previous_names":[],"tags_count":10,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eeeeeric%2FrSalvador","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eeeeeric%2FrSalvador/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eeeeeric%2FrSalvador/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eeeeeric%2FrSalvador/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/eeeeeric","download_url":"https://codeload.github.com/eeeeeric/rSalvador/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248655015,"owners_count":21140410,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["luria-delbruck","r"],"created_at":"2024-11-07T17:47:14.044Z","updated_at":"2025-04-13T02:23:29.948Z","avatar_url":"https://github.com/eeeeeric.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"rSalvador\n=========\n\nrSalvador: An R Tool for the Luria-Delbruck Fluctuation Assay\n\n📣 For those who prefer the convenience of a web tool, webSalvador is a new app powered by rSalvador: https://websalvador.eeeeeric.com/\n\nInstalling from GitHub\n----------------------\n\n- Download and install R 3.6.1 or later.\n- Install Rtools 3.5 by downloading and executing the file Rtools35.exe.\n- Launch R.\n- Install the R package devtools by executing the following command from within R.\n```install.packages('devtools')```\n- Execute the following devtools command from within R.\n```devtools::install_github(\"eeeeeric/rSalvador\", subdir = \"rsalvador\")```\n\nInstalling from prebuilt packages\n---------------------------------\n`R CMD INSTALL \u003cpackage\u003e` where `\u003cpackage\u003e` is the appropriate download from\nthe [release page](https://github.com/eeeeeric/rSalvador/releases).\n\nThese releases are built using [GitHub Actions](.github/workflows/build.yml).\n\nInstalling from source\n----------------------\n```\nR CMD check rsalvador\nR CMD INSTALL rsalvador\n```\n\nFor Python 3 users\n------------------\nSome frequently used rSalvador functions are also available in pySalvador for Python users ([source](./pysalvador/pysalvador.py), [Jupyter manual](./pysalvador/userManual.ipynb)).\n\nBuilding on Windows - Environment Preparation\n---------------------------------------------\nDownload and install R, rtools, Strawberry Perl, and MiKTeX. Strawberry Perl,\nMiKTeX, and rtools will automatically add themselves to the PATH, but you will\nneed to add R manually. Note that MiKTeX is only necessary if you wish to build\ndocumentation,\n\nOpen a R prompt, and install the hypergeo and gdata packages.\n```\ninstall.packages('hypergeo')\ninstall.packages('gdata')\n```\n\nNow you are ready to build (see below).\n\nBuilding an installable archive (all platforms)\n-----------------------------------------------\nThis will check the source files (requires LaTeX), okay to skip\n```\nR CMD check rsalvador\n```\n\nThis will produce the archive\n```\nR CMD INSTALL --build rsalvador\n```\n\nAuthor\n------\nQi Zheng\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Feeeeeric%2Frsalvador","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Feeeeeric%2Frsalvador","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Feeeeeric%2Frsalvador/lists"}