{"id":18380861,"url":"https://github.com/eeholmes/eeholmes","last_synced_at":"2026-03-19T04:06:34.330Z","repository":{"id":55262844,"uuid":"405723117","full_name":"eeholmes/eeholmes","owner":"eeholmes","description":null,"archived":false,"fork":false,"pushed_at":"2022-10-24T16:13:52.000Z","size":317,"stargazers_count":0,"open_issues_count":2,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-02-15T23:29:37.964Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/eeholmes.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2021-09-12T18:34:17.000Z","updated_at":"2021-12-22T19:53:49.000Z","dependencies_parsed_at":"2023-01-20T12:21:21.722Z","dependency_job_id":null,"html_url":"https://github.com/eeholmes/eeholmes","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eeholmes%2Feeholmes","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eeholmes%2Feeholmes/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eeholmes%2Feeholmes/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eeholmes%2Feeholmes/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/eeholmes","download_url":"https://codeload.github.com/eeholmes/eeholmes/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248442638,"owners_count":21104229,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-06T00:43:48.610Z","updated_at":"2026-01-27T20:36:51.978Z","avatar_url":"https://github.com/eeholmes.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# [E. Eli Holmes](https://eeholmes.github.io/) ![](https://visitor-badge.laobi.icu/badge?page_id=eeholmes.eeholmes) [![Github](https://img.shields.io/github/followers/eeholmes?label=Follow\u0026style=social)](https://github.com/eeholmes)\n\n\u003cimg align=\"right\" src=\"India_2019.gif\" width=\"250\"\u003e  \n\nResearch Fisheries Biologist, Northwest Fisheries Science Center, NOAA Fisheries\u003cbr\u003e\nAffiliate faculty, SAFS, University of Washington, Seattle\n\n***\n\nMy eeholmes account has mostly sandboxy repos. To find my code and teaching products, look in the GH orgs that I contribute to (table below). For time series stuff: [ATSA book](https://atsa-es.github.io/atsa-labs/), [ATSA course](https://atsa-es.github.io/atsa/), [MARSS](https://atsa-es.github.io/MARSS/), [MARSS with Stan](https://atsa-es.github.io/atsar/).\n\n\u003c!--\nHorizontal table version (commented out)\n\n| NWFSC\u003cbr\u003eTime Series | NWFSC\u003cbr\u003eMath Bio | Fish\u003cbr\u003eForecast | R Workflow | Remote\u003cbr\u003eSensing\u003cbr\u003eTools | Upwelling |\n| :---: | :---: | :---: | :---: | :---: | :---: |\n| [![](https://avatars.githubusercontent.com/u/26258338?s=60\u0026v=4)](https://nwfsc-timeseries.github.io) | [![](https://avatars.githubusercontent.com/u/36172008?s=60\u0026v=4)](https://nwfsc-math-bio.github.io) | [![](https://avatars.githubusercontent.com/u/42893428?s=60\u0026v=4)](https://fish-forecast.github.io/) | [![](https://avatars.githubusercontent.com/u/42900757?s=60\u0026v=4)](https://rverse-tutorials.github.io/) | [![](https://avatars.githubusercontent.com/u/50644468?s=60\u0026v=4)](https://github.com/ocean-satellite-tools) | [![](https://avatars.githubusercontent.com/u/85971012?s=60\u0026v=4)](https://github.com/UW-Upwelling-Project) |\n| [\u003cimg width=\"20\" src=\"globe.png\"\u003e](https://nwfsc-timeseries.github.io)  [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/nwfsc-timeseries) | [\u003cimg width=\"20\" src=\"globe.png\"\u003e](https://nwfsc-math-bio.github.io)  [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/nwfsc-math-bio) | [\u003cimg width=\"20\" src=\"globe.png\"\u003e](https://fish-forecast.github.io) [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/fish-forecast) | [\u003cimg width=\"20\" src=\"globe.png\"\u003e](https://rverse-tutorials.github.io) [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/RVerse-Tutorials) | [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/ocean-satellite-tools) | [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/UW-Upwelling-Project) |\n| [![GitHub org issues](https://img.shields.io/github/issues-search?label=open%20issues\u0026query=org%3Anwfsc-timeseries%20is%3Aopen)](https://github.com/orgs/nwfsc-timeseries/projects/1) |  |  |  |  | [![GitHub org issues](https://img.shields.io/github/issues-search?label=open%20issues\u0026query=org%3AUW-Upwelling-Project%20is%3Aopen)](https://github.com/orgs/UW-Upwelling-Project/projects/5) |\n--\u003e\n\n\u003c!--\nVertical table with markdown; I don't like the header\n--\u003e\n| org | \u003chr\u003e | links | status |\n| :---: | :---: | :---: | :---: |\n| Applied Time\u003cbr\u003eSeries Analysis | [\u003cimg src=\"https://avatars.githubusercontent.com/u/26258338?s=60\u0026v=4\" width=\"75%\"\u003e](https://atsa-es.github.io) | [\u003cimg width=\"20\" src=\"globe.png\"\u003e](https://atsa-es.github.io)  [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/atsa-es) | [![GitHub org issues](https://img.shields.io/github/issues-search?label=open%20issues\u0026query=org%3Aatsa-es%20is%3Aopen)](https://github.com/orgs/atsa-es/projects/1) |\n| NWFSC\u003cbr\u003eTime Series | [\u003cimg src=\"https://avatars.githubusercontent.com/u/26258338?s=60\u0026v=4\" width=\"75%\"\u003e](https://nwfsc-timeseries.github.io) | [\u003cimg width=\"20\" src=\"globe.png\"\u003e](https://nwfsc-timeseries.github.io)  [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/nwfsc-timeseries) | [![GitHub org issues](https://img.shields.io/github/issues-search?label=open%20issues\u0026query=org%3Anwfsc-timeseries%20is%3Aopen)](https://github.com/orgs/nwfsc-timeseries/projects/1) |\n| NWFSC\u003cbr\u003eMath Bio | [\u003cimg src=\"https://avatars.githubusercontent.com/u/36172008?s=60\u0026v=4\" width=\"75%\"\u003e](https://nwfsc-math-bio.github.io) | [\u003cimg width=\"20\" src=\"globe.png\"\u003e](https://nwfsc-math-bio.github.io)  [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/nwfsc-math-bio) |  |\n| Fish Forecast | [\u003cimg src=\"https://avatars.githubusercontent.com/u/42893428?s=60\u0026v=4\" width=\"75%\"\u003e](https://fish-forecast.github.io) | [\u003cimg width=\"20\" src=\"globe.png\"\u003e](https://fish-forecast.github.io) [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/fish-forecast) |  |\n| Rverse\u003cbr\u003eTutorials | [\u003cimg src=\"https://avatars.githubusercontent.com/u/42900757?s=60\u0026v=4\" width=\"75%\"\u003e](https://rverse-tutorials.github.io/) | [\u003cimg width=\"20\" src=\"globe.png\"\u003e](https://rverse-tutorials.github.io) [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/RVerse-Tutorials) |  |\n| Ocean\u003cbr\u003eSatellite Tools | [\u003cimg src=\"https://avatars.githubusercontent.com/u/50644468?s=60\u0026v=4\" width=\"75%\"\u003e](https://github.com/ocean-satellite-tools) | [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/ocean-satellite-tools) |  |\n| Upwelling project | [\u003cimg src=\"https://avatars.githubusercontent.com/u/85971012?s=60\u0026v=4\" width=\"75%\"\u003e](https://github.com/UW-Upwelling-Project) | [\u003cimg width=\"20\" src=\"GitHub-Mark-32px.png\"\u003e](https://github.com/UW-Upwelling-Project) | [![GitHub org issues](https://img.shields.io/github/issues-search?label=open%20issues\u0026query=org%3AUW-Upwelling-Project%20is%3Aopen)](https://github.com/orgs/UW-Upwelling-Project/projects/5) |\n\nI am also a contributor to [NMFS OpenSci](https://nmfs-opensci.github.io), [Openscapes](https://github.com/openscapes), [NMFS Openscapes](https://nmfs-openscapes.github.io), [NMFS R User Group](https://nmfs-openscapes.github.io/NMFS-R-UG/) and [R-Govys](https://github.com/rgovys).\n\nFinding my stuff: You can try searching by topic: `https://github.com/search?q=topic:\u003cTOPIC\u003e+user:eeholmes\u0026type=Repositories`. Topics: R, MARSS, jupyter, earthdata, remote-sensing, upwelling, teaching.\n\n\u003chr\u003e\n\nThe repositories in my eeholmes GitHub account are scientific products and are not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. The scientific results and conclusions, as well as any views or opinions expressed herein, are mine and do not necessarily reflect the views of NOAA or the Department of Commerce. In addition, this account may have forked repositories that are not my work. \n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Feeholmes%2Feeholmes","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Feeholmes%2Feeholmes","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Feeholmes%2Feeholmes/lists"}