{"id":24641152,"url":"https://github.com/elixir-cloud-aai/tesk-core","last_synced_at":"2026-02-26T02:04:00.132Z","repository":{"id":45579304,"uuid":"128085890","full_name":"elixir-cloud-aai/tesk-core","owner":"elixir-cloud-aai","description":"Python code that is launched as images into the Kubernetes cluster by tesk-api.","archived":false,"fork":false,"pushed_at":"2024-12-16T08:36:52.000Z","size":565,"stargazers_count":2,"open_issues_count":4,"forks_count":13,"subscribers_count":33,"default_branch":"master","last_synced_at":"2025-03-31T23:36:05.949Z","etag":null,"topics":["ga4gh","tesk"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/elixir-cloud-aai.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-04-04T15:54:48.000Z","updated_at":"2024-12-16T08:36:57.000Z","dependencies_parsed_at":"2024-12-16T09:26:19.432Z","dependency_job_id":"fc373934-9a6f-4150-99f7-fa8ff91531fa","html_url":"https://github.com/elixir-cloud-aai/tesk-core","commit_stats":null,"previous_names":[],"tags_count":48,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/elixir-cloud-aai%2Ftesk-core","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/elixir-cloud-aai%2Ftesk-core/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/elixir-cloud-aai%2Ftesk-core/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/elixir-cloud-aai%2Ftesk-core/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/elixir-cloud-aai","download_url":"https://codeload.github.com/elixir-cloud-aai/tesk-core/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":253761513,"owners_count":21960160,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["ga4gh","tesk"],"created_at":"2025-01-25T12:12:27.944Z","updated_at":"2026-02-26T02:04:00.126Z","avatar_url":"https://github.com/elixir-cloud-aai.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Build Status](https://travis-ci.org/EMBL-EBI-TSI/tesk-core.svg?branch=master)](https://travis-ci.org/EMBL-EBI-TSI/tesk-core)\n[![codecov](https://codecov.io/gh/EMBL-EBI-TSI/tesk-core/branch/master/graph/badge.svg)](https://codecov.io/gh/EMBL-EBI-TSI/tesk-core)\n\n## Introduction\n\nThis project is part of the [TESK](https://github.com/EMBL-EBI-TSI/TESK) initiative.\nIt contains the code needed to generate 2 types of agents that reside in kubernetes:\n* The taskmaster, which spins up the containers needed to complete tasks as defined by TESK\n* The filer, which populates volumes and input files and uploads output files\n\n## How to use\n\nSince the code is meant to be in kubernetes pods, the code needs to be packaged into containers.\nTheir descriptions can be found in `containers/`.\nThe root folder assumed to build the containers is the root of this package.\n\nTo build the taskmaster container, run:\n\n```\ndocker build . -f containers/taskmaster.Dockerfile -t taskmaster:latest\n```\n\nThe command is similar for the filer container:\n\n```\ndocker build . -f containers/filer.Dockerfile -t filer:latest\n```\n\n## Unit testing\n\nUnit testing needs the `tox` package.\n\nYou can install the package using `uv`:\n\n```\nuv install tox\n```\n\nTo install different python versions using `uv`, you can type:\n\n```\nuv python install 3.10 3.11 3.12\n```\n\nThis software will take care of creating virtual environments and installing dependencies in them before running the actual tests and generating the coverage reports.\n\n```\n$ uv run tox\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Felixir-cloud-aai%2Ftesk-core","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Felixir-cloud-aai%2Ftesk-core","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Felixir-cloud-aai%2Ftesk-core/lists"}