{"id":27247563,"url":"https://github.com/etetoolkit/pmodeltest","last_synced_at":"2025-04-10T22:58:01.440Z","repository":{"id":2400740,"uuid":"3367805","full_name":"etetoolkit/pmodeltest","owner":"etetoolkit","description":"Python implementation of modeltest/prottest supporting proteins and nucleotides (can be run in parallel).","archived":false,"fork":false,"pushed_at":"2020-02-26T12:49:49.000Z","size":1088,"stargazers_count":5,"open_issues_count":2,"forks_count":5,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-04-10T22:57:57.685Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/etetoolkit.png","metadata":{"files":{"readme":"README","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2012-02-06T14:58:28.000Z","updated_at":"2020-02-26T12:49:52.000Z","dependencies_parsed_at":"2022-09-09T16:00:21.963Z","dependency_job_id":null,"html_url":"https://github.com/etetoolkit/pmodeltest","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/etetoolkit%2Fpmodeltest","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/etetoolkit%2Fpmodeltest/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/etetoolkit%2Fpmodeltest/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/etetoolkit%2Fpmodeltest/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/etetoolkit","download_url":"https://codeload.github.com/etetoolkit/pmodeltest/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248312165,"owners_count":21082638,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-04-10T22:58:00.829Z","updated_at":"2025-04-10T22:58:01.417Z","avatar_url":"https://github.com/etetoolkit.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"###  README --- pmodeltest/\n\n## Copyright 2011 Francois Serra\n##\n## Keywords: Phylogeny modeltest model selection AIC Akaike\n\nTests evolutionary models like jModelTest but also for proteins.\n'bitfast' option allows to run topology optimization on most weighted models.\nReturn 'best' tree with SH branch support value.\n\nAll based on the behavior of jModelTest:\n jModelTest: phylogenetic model averaging.\n Posada D\n Mol Biol Evol25p1253-6(2008 Jul)\n\nand ProtTest:\n ProtTest: selection of best-fit models of protein evolution.\n Abascal F, Zardoya R, Posada D\n Bioinformatics21p2104-5(2005 May 1)\n\nWARNING: use phyml version: 20110919\n         available at: http://code.google.com/p/phyml/\n\n\nBEFORE ALL, test:\npython test_all.py\n\n\nUsage:\npython pmodeltest.py -i example/protein.phy [-o tree] [-O trees] [running options]\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fetetoolkit%2Fpmodeltest","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fetetoolkit%2Fpmodeltest","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fetetoolkit%2Fpmodeltest/lists"}