{"id":23210132,"url":"https://github.com/ethanbass/shinychromviewer","last_synced_at":"2025-04-05T12:24:09.658Z","repository":{"id":107292850,"uuid":"497648247","full_name":"ethanbass/ShinyChromViewer","owner":"ethanbass","description":"Shiny gadget for interactively viewing 3D chromatograms","archived":false,"fork":false,"pushed_at":"2022-11-13T20:55:00.000Z","size":422,"stargazers_count":3,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-02-10T23:39:37.035Z","etag":null,"topics":["chromatography","hplc","hplc-dad","hplc-uv","open-data","open-science","r-package","rstats","shiny","shiny-apps"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ethanbass.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2022-05-29T16:38:30.000Z","updated_at":"2025-01-10T23:33:48.000Z","dependencies_parsed_at":null,"dependency_job_id":"6fc5d2ca-688a-411f-84e7-e6159777a40b","html_url":"https://github.com/ethanbass/ShinyChromViewer","commit_stats":{"total_commits":21,"total_committers":1,"mean_commits":21.0,"dds":0.0,"last_synced_commit":"410e17ef0e8d7f2c723b08f28d774d4ecbade37c"},"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ethanbass%2FShinyChromViewer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ethanbass%2FShinyChromViewer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ethanbass%2FShinyChromViewer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ethanbass%2FShinyChromViewer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ethanbass","download_url":"https://codeload.github.com/ethanbass/ShinyChromViewer/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247334461,"owners_count":20922216,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["chromatography","hplc","hplc-dad","hplc-uv","open-data","open-science","r-package","rstats","shiny","shiny-apps"],"created_at":"2024-12-18T18:32:07.741Z","updated_at":"2025-04-05T12:24:09.640Z","avatar_url":"https://github.com/ethanbass.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# ShinyChromViewer\n\n\u003c!-- badges: start --\u003e\n  [![ShinyChromViewer status badge](https://ethanbass.r-universe.dev/badges/ShinyChromViewer)](https://ethanbass.r-universe.dev)\n  [![stability-experimental](https://img.shields.io/badge/stability-experimental-orange.svg)](https://github.com/emersion/stability-badges#experimental)\n\u003c!-- badges: end --\u003e\n\n## Overview\n\nShinyChromViewer is an Shiny gadget for interactive viewing and exploration of 3D chromatographic data (e.g. from HPLC-DAD). It is mainly meant to be used in conjunction with [chromatographR](https://ethanbass.github.io/chromatographR) as an add-on.\n\n## Installation\n\nShinyChromViewer can be installed from GitHub as follows:\n\n```\ninstall.packages(\"devtools\")\ndevtools::install_github(\"https://github.com/ethanbass/ShinyChromViewer/\")\n```\n\nOr install directly from my R Universe repo:\n\n```\ninstall.packages(\"ShinyChromViewer\", repos=\"https://ethanbass.r-universe.dev/\", type=\"source\")\n```\n\n## Usage\n\nTo run ShinyChromConverter you must provide a list of chromatograms in `matrix` format. In addition, you can provide a `peak_table` object produced by [chromatographR](https://ethanbass.github.io/chromatographR). The script below loads the example data from chromatographR and launches the `chrom_viewer`. \n\n```\nlibrary(chromatographR)\nlibrary(ShinyChromViewer)\ndata(Sa_warp)\ndata(pk_tab)\nchrom_viewer(pk_tab)\n```\n\nTo view spectra, click on the trace plot (*lower left panel*) or the peak table (*right panel*).\n\n\u003cimg src=\"man/images/shinyChromViewerUI.png\"\u003e\u003c/img\u003e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fethanbass%2Fshinychromviewer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fethanbass%2Fshinychromviewer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fethanbass%2Fshinychromviewer/lists"}