{"id":19778444,"url":"https://github.com/evancarroll/mumine","last_synced_at":"2025-08-01T17:35:13.153Z","repository":{"id":66753750,"uuid":"116161980","full_name":"EvanCarroll/mumine","owner":"EvanCarroll","description":"Work pertaining to import and analytics of unknown data source (mass spec), example of Chado integration","archived":false,"fork":false,"pushed_at":"2018-01-03T17:13:29.000Z","size":2,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-02-25T02:05:48.296Z","etag":null,"topics":["chado","flybase","postgresql"],"latest_commit_sha":null,"homepage":"","language":"PLpgSQL","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/EvanCarroll.png","metadata":{"files":{"readme":"README.markdown","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-01-03T17:07:16.000Z","updated_at":"2018-01-03T17:11:38.000Z","dependencies_parsed_at":"2023-02-24T16:15:25.166Z","dependency_job_id":null,"html_url":"https://github.com/EvanCarroll/mumine","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/EvanCarroll%2Fmumine","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/EvanCarroll%2Fmumine/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/EvanCarroll%2Fmumine/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/EvanCarroll%2Fmumine/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/EvanCarroll","download_url":"https://codeload.github.com/EvanCarroll/mumine/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":241108483,"owners_count":19910997,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["chado","flybase","postgresql"],"created_at":"2024-11-12T05:29:28.922Z","updated_at":"2025-02-28T05:56:27.590Z","avatar_url":"https://github.com/EvanCarroll.png","language":"PLpgSQL","funding_links":[],"categories":[],"sub_categories":[],"readme":"NAME\n====\n\nChado FDW and data loaders.\n\nDESCRIPTION\n====\n\nNo idea what generates this data, but essentially I got a bunch of stuff like \n\n```\nB5X552,SD13785p (Fragment) (CG11873-RA) [] - [B5X552_DROME],,,1,5.678E5\nQ4V5Z4,IP11818p (CG11360) [MEX3A;MEX3B;MEX3C;MEX3D] - [Q4V5Z4_DROME],,,1,1.168E5\n```\n\nThe fields are described in [the sql column names](./sql/24_mumine_tables.sql).\nThe compound name, second field in the above example gets parsed into the\nconstituent parts,\n\n* name_uniprotkb\n* name_human_ortholog\n* name_orf_gene\n* name_protein\n\nThen a normalized name gets produced which is ideally the `orf_gene`, unless\nthat's wrong otherwise it is the `name_protein` unless that's also wrong\n(search `EG:`) in which case we fall back and use the `orf_gene`.\n\nWe further link with Chado using PostgreSQL's\n[`postgres_fdw`](https://www.postgresql.org/docs/current/static/postgres-fdw.html)\nso we can run cross-db queries.\n\n**EVERYTHING INSTALLS INTO `mumine` SCHEMA**\n\nLICENSE\n====\n\nCC-BY-SA 4.0\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fevancarroll%2Fmumine","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fevancarroll%2Fmumine","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fevancarroll%2Fmumine/lists"}