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reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["booster","bootstrap","golang","phylogeny","transfer","webapp"],"created_at":"2025-10-30T17:01:37.028Z","updated_at":"2026-04-12T08:41:47.340Z","avatar_url":"https://github.com/evolbioinfo.png","language":"Go","funding_links":[],"categories":[],"sub_categories":[],"readme":"# BOOSTER-WEB: Web interface to [BOOSTER](http://booster.c3bi.pasteur.fr)\n![build](https://travis-ci.org/evolbioinfo/booster-web.svg?branch=master)\n\nThis interface presents informations about BOOSTER program, and allows to run BOOSTER easily.\n\n# Installing BOOSTER-WEB\n## Already compiled\nDownload a release in the [release](https://github.com/evolbioinfo/booster-web/releases) section. You can directly run the executable for your platform.\n\n## From source\nTo compile BOOSTER-WEB, you must [download](https://golang.org/dl/) and [install](https://golang.org/doc/install) Go (version \u003e=1.9) on your system.\n\nThen you just have to type :\n```\ngo get github.com/evolbioinfo/booster-web/\ngo get -u github.com/golang/dep/cmd/dep\n```\n\nThis will download BOOSTER-WEB sources from github, and its dependencies.\n\nYou can then build BOOSTER-WEB with:\n```\ncd $GOPATH/src/github.com/evolbioinfo/booster-web/\ndep ensure\nmake\n```\n\nThe `booster-web` executable should be located in the `$GOPATH/bin` folder.\n\n## From Docker\n\nA docker image running a Galaxy server with all tools used by booster-web (PhyML-SMS, FastTree, Booster) and an already configured booster-web server is avalaible on [docker hub](https://hub.docker.com/r/evolbioinfo/booster-web/).\n\n* Download and run already configured booster-web + galaxy servers:\n\n```\ndocker run --privileged=true \\\n            -p 8080:80 -p 8000:8888 \\\n            -p 8 -p 8121:21 -p 8122:22 \\\n            evolbioinfo/booster-web:v0.1.8\n```\n\nThen visit [http://localhost:8000](http://localhost:8000) .\n\n\n# Running BOOSTER-WEB\n## Default configuration\nYou can directly run the `booster-web` executable without any configuration. It will setup a web server with the following default properties:\n* Run on localhost, port 8080\n* Log to stderr\n* In memory database (analyses will not persist after server shutdown)\n* Local processor (booster jobs will run on the local machine)\n* 1 parallel Runner: One job at a time\n* Job Timeout: unlimited\n* 1 thread per job\n\nTo access the web interface, just go to [http://localhost:8080](http://localhost:8080)\n\nNote that the local processor only allows to run booster from already inferred trees (no PhyML-SMS nor FastTree workflow).\nTo also run tree inference workflows, see \"Other configurations\", or \"Install from Docker\".\n\n## Other configurations\nIt is possible to configure `booster-web` to run with specific options. To do so, create a configuration file `booster-web.toml` with the following sections:\n* general\n  * maintenance = [true|false]\n* database\n  * type = \"[memory|mysql]\"\n  * user = \"[mysql user]\"\n  * port = [mysql port]\n  * host = \"[mysql host]\"\n  * pass = \"[mysql pass]\"\n  * dbname = \"[mysql dbname]\"\n* itol\n  * key = \"[iTOL api key]\"\n  * project = \"[itol upload project]\"\n* runners\n  * type=\"[galaxy|local]\"\n  * queuesize=[size of job queue]\n  * nbrunners=[number of parallel local runners]\n  * jobthreads=[number of threads per local job]\n  * timeout=[job timeout in seconds: 0=ulimited]\n  * memlimit=[Max allowed Memory in Bytes]\n  * keepold=[Number of days to keep results of old analyses]\n* galaxy (Only used if runners.type=\"galaxy\")\n  * key=\"[galaxy api key]\"\n  * url=\"[url of the galaxy server: http(s)://ip:port]\"\n* galaxy.tools\n  * booster=\"[Id of booster tool on the galaxy server]\"\n  * phyml=\"[Id of PHYML-SMS tool on the galaxy server]\"\n  * fasttree=\"[Id of FastTree tool on the galaxy server]\"\n* notification (for notification when jobs are finished)\n  * activated=[true|false]\n  * smtp=\"[smtp serveur for sending email]\"\n  * port=[smtp port]\n  * user=\"[smtp user]\"\n  * pass=\"[smtp password]\"\n  * resultpage = \"[url to result pages]\"\n  * sender=\"[sender of the notification]\"\n* logging\n  * logfile= \"[stderr|stdout|/path/to/logfile]\"\n* http\n  * port=[http server listening port]\n* authentication\n  * user=\"[global username]\"\n  * password=\"[global password]\"\n\nAnd run booster web: `booster-web --config booster-web.toml`\n\n## Example of configuration file\n```\n[general]\n# If booster-web is in maintenance mode or not\nmaintenance = false\n\n[database]\n# Type : memory|mysql (default memory)\ntype = \"mysql\"\nuser = \"mysql_user\"\nport = 3306\nhost = \"mysql_server\"\npass = \"mysql_pass\"\ndbname = \"mysql_db_name\"\n\n[itol]\nkey = \"xxxxxxxxxx\"\nproject = \"booster\"\n\n[runners]\n# galaxy|local if galaxy: required galaxykey \u0026 galaxyurl\ntype=\"galaxy\"\n# Maximum number of pending jobs (default : 10): for galaxy \u0026 local\nqueuesize = 200\n# Number of parallel running jobs (default : 1): for local only\nnbrunners  = 1\n# Number of cpus per bootstrap job : for local only\njobthreads  = 10\n# Timout for each job in seconds (default unlimited): for local only\n#timeout  = 1000\n# Memory limit in Bytes for each job (uses job memory estimation): for galaxy only\n#memlimit  = 8000000000\n# Keep old finished analyses for 10 days, default=0 (unlimited)\nkeepold = 10\n\n#Only used if runners.type=\"galaxy\"\n[galaxy]\nkey=\"galaxy_api_key\"\nurl=\"https://galaxy.server.com/\"\n\n[galaxy.tools]\n# Id of booster tool on the galaxy server\nbooster=\"/.../booster/booster/version\"\n# Id of PhyML-SMS tool on the galaxy server\nphyml=\"/.../phyml-sms/version\"\n# Id of FastTree tool on the galaxy server\nfasttree=\"/.../fasttree/version\"\n\n# For notification when job is finished\n[notification]\n# true|false\nactivated=true\n# smtp serveur for sending email\nsmtp=\"smtp.serveur.com\"\n# Port\nport=587\n# Smtp user \nuser=\"smtp_user\"\n# Smtp password\npass=\"smtp_pass\"\n# booster-web server name:port/view page,\n# used to give the right url in result email\nresultpage = \"http://url/view\"\n# sender of the notification\nsender = \"sender@server.com\"\n\n[logging]\n# Log file : stdout|stderr|any file\nlogfile = \"booster.log\"\n\n[http]\n# HTTP server Listening port\nport = 4000\n\n# For running a private server, default: no authentication\n#[authentication]\n#user     = \"user\"\n#password = \"pass\"\n```\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fevolbioinfo%2Fbooster-web","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fevolbioinfo%2Fbooster-web","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fevolbioinfo%2Fbooster-web/lists"}