{"id":13703406,"url":"https://github.com/ewels/sra-explorer","last_synced_at":"2025-04-09T18:16:05.238Z","repository":{"id":20933570,"uuid":"24221815","full_name":"ewels/sra-explorer","owner":"ewels","description":"Web application to explore the Sequence Read Archive.","archived":false,"fork":false,"pushed_at":"2025-03-28T12:34:02.000Z","size":618,"stargazers_count":215,"open_issues_count":11,"forks_count":29,"subscribers_count":8,"default_branch":"gh-pages","last_synced_at":"2025-04-09T18:16:01.146Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://sra-explorer.info/","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ewels.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2014-09-19T08:15:53.000Z","updated_at":"2025-03-28T12:34:05.000Z","dependencies_parsed_at":"2022-07-07T22:51:13.269Z","dependency_job_id":"d37fe5d0-c487-4a4b-a74f-8aceb6f5b0f6","html_url":"https://github.com/ewels/sra-explorer","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ewels%2Fsra-explorer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ewels%2Fsra-explorer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ewels%2Fsra-explorer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ewels%2Fsra-explorer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ewels","download_url":"https://codeload.github.com/ewels/sra-explorer/tar.gz/refs/heads/gh-pages","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248085322,"owners_count":21045139,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-08-02T21:00:54.410Z","updated_at":"2025-04-09T18:16:05.217Z","avatar_url":"https://github.com/ewels.png","language":"HTML","funding_links":[],"categories":["Data Tools"],"sub_categories":["Downloading"],"readme":"# SRA-Explorer\n\nMini web application to explore the [NCBI Sequence Read Archive](https://www.ncbi.nlm.nih.gov/sra) and easily access downloads for data, either as `.sra` files from the NCBI or as `.fastq` via the [EBI ENA](https://www.ebi.ac.uk/ena).\n\nThis tool should out of the box, entirely in your browser with no need for any back-end setup. You can use it in two ways:\n\n1. Directly on the web: http://sra-explorer.info/\n2. Download the `index.html` file and load in your web browser.\n\nSRA-Explorer was a fun mini-project done in my spare time. If you have found it useful, why not [tag me in a tweet](https://twitter.com/tallphil) 😁\n\n## Packages used\n\nAll the code relating to the SRA API calls are taken from [Labrador](https://github.com/ewels/labrador). The page is built using the [Bootstrap](http://getbootstrap.com) CSS framework and all of the interaction magic happens using [AngularJS](https://angularjs.org). The copy to clipboard buttons are powered by [Clipboard.js](https://clipboardjs.com/).\n\n## Alternatives\n\nIf you're here a lot, it may be worth taking a look at some excellent command-line alternatives. For example:\n\n* [nf-core/fetchngs](https://nf-co.re/fetchngs)\n* [pysradb](https://github.com/saketkc/pysradb)\n* [fetchfastq](https://github.com/pachterlab/ffq)\n\nThese tools are more scalable and stable than SRA-Explorer.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fewels%2Fsra-explorer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fewels%2Fsra-explorer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fewels%2Fsra-explorer/lists"}