{"id":45822896,"url":"https://github.com/fabilab/iplotx","last_synced_at":"2026-05-04T07:03:51.116Z","repository":{"id":291553404,"uuid":"977982351","full_name":"fabilab/iplotx","owner":"fabilab","description":"Visualise networks and trees in Python, with style.","archived":false,"fork":false,"pushed_at":"2026-02-20T23:20:29.000Z","size":3927,"stargazers_count":82,"open_issues_count":5,"forks_count":2,"subscribers_count":2,"default_branch":"main","last_synced_at":"2026-02-21T04:58:12.602Z","etag":null,"topics":["biopython","cogent3","graphs","igraph","matplotlib","networks","networkx","plotting","python","scikit-bio","visualization"],"latest_commit_sha":null,"homepage":"https://iplotx.readthedocs.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/fabilab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2025-05-05T09:33:33.000Z","updated_at":"2026-02-20T23:18:21.000Z","dependencies_parsed_at":"2025-07-10T07:13:55.845Z","dependency_job_id":"22790ac6-ac03-49df-873c-134603e55595","html_url":"https://github.com/fabilab/iplotx","commit_stats":null,"previous_names":["fabilab/iplotx"],"tags_count":35,"template":false,"template_full_name":null,"purl":"pkg:github/fabilab/iplotx","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fabilab%2Fiplotx","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fabilab%2Fiplotx/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fabilab%2Fiplotx/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fabilab%2Fiplotx/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/fabilab","download_url":"https://codeload.github.com/fabilab/iplotx/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fabilab%2Fiplotx/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29872674,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-26T21:01:59.805Z","status":"ssl_error","status_checked_at":"2026-02-26T21:00:42.555Z","response_time":89,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["biopython","cogent3","graphs","igraph","matplotlib","networks","networkx","plotting","python","scikit-bio","visualization"],"created_at":"2026-02-26T21:04:01.513Z","updated_at":"2026-05-04T07:03:51.090Z","avatar_url":"https://github.com/fabilab.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Github Actions](https://github.com/fabilab/iplotx/actions/workflows/test.yml/badge.svg)](https://github.com/fabilab/iplotx/actions/workflows/test.yml)\n[![PyPI - Version](https://img.shields.io/pypi/v/iplotx)](https://pypi.org/project/iplotx/)\n[![RTD](https://readthedocs.org/projects/iplotx/badge/?version=latest)](https://iplotx.readthedocs.io/en/latest/)\n[![Coverage Status](https://coveralls.io/repos/github/fabilab/iplotx/badge.svg?branch=main)](https://coveralls.io/github/fabilab/iplotx?branch=main)\n![pylint](assets/pylint.svg)\n[DOI](https://f1000research.com/articles/14-1377)\n\n\n# iplotx\n[![Banner](docs/source/_static/banner.png)](https://iplotx.readthedocs.io/en/latest/gallery/index.html).\n\nVisualise networks and trees in Python, with style.\n\nSupports:\n- **networks**:\n  - [networkx](https://networkx.org/)\n  - [igraph](igraph.readthedocs.io/)\n  - [graph-tool](https://graph-tool.skewed.de/)\n  - [zero-dependency](https://iplotx.readthedocs.io/en/latest/gallery/plot_simplenetworkdataprovider.html#sphx-glr-gallery-plot-simplenetworkdataprovider-py)\n- **trees**:\n  - [ETE4](https://etetoolkit.github.io/ete/)\n  - [cogent3](https://cogent3.org/)\n  - [phyloframe](https://phyloframe.readthedocs.io)\n  - [Biopython](https://biopython.org/)\n  - [scikit-bio](https://scikit.bio)\n  - [dendropy](https://jeetsukumaran.github.io/DendroPy/index.html)\n  - [zero-dependency](https://iplotx.readthedocs.io/en/latest/gallery/tree/plot_simpletreedataprovider.html#sphx-glr-gallery-tree-plot-simpletreedataprovider-py)\n\nIn addition to the above, *any* network or tree analysis library can register an [entry point](https://iplotx.readthedocs.io/en/latest/providers.html#creating-a-custom-data-provider) to gain compatibility with `iplotx` with no intervention from our side.\n\n## Installation\n```bash\npip install iplotx\n```\n\n## Quick Start\n```python\nimport networkx as nx\nimport matplotlib.pyplot as plt\nimport iplotx as ipx\n\ng = nx.Graph([(0, 1), (1, 2), (2, 3), (3, 4), (4, 0)])\nlayout = nx.layout.circular_layout(g)\nipx.plot(g, layout)\n```\n\n![Quick start image](/docs/source/_static/graph_basic.png)\n\n## Documentation\nSee [documentation](https://iplotx.readthedocs.io/en/latest/) and [gallery](https://iplotx.readthedocs.io/en/latest/gallery/index.html).\n\n## Citation\nIf you use `iplotx` for publication figures, please cite:\n\n```\nF. Zanini. A universal tool for visualisation of networks and trees in Python. F1000Research 2025, 14:1377. https://doi.org/10.12688/f1000research.173131.1\n```\n\n## Features\n- Plot networks from multiple libraries including networkx, igraph and graph-tool, using Matplotlib. ✅\n- Plot trees from multiple libraries such as cogent3, ETE4, phyloframe, skbio, biopython, and dendropy. ✅\n- Flexible yet easy styling, including an internal library of styles ✅\n- Interactive plotting, e.g. zooming and panning after the plot is created. ✅\n- Store the plot to disk in many formats (SVG, PNG, PDF, GIF, etc.). ✅\n- 3D network visualisation with depth shading. ✅\n- Efficient plotting of large graphs (up to ~1 million nodes on a laptop). ✅\n- Edit plotting elements after the plot is created, e.g. changing node colors, labels, etc. ✅\n- Animations, e.g. showing the evolution of a network over time. ✅\n- Mouse and keyboard interaction, e.g. hovering over nodes/edges to get information about them. ✅\n- Node clustering and covers, e.g. showing communities in a network. ✅\n- Edge tension, edge waypoints, and edge ports. ✅\n- Choice of tree layouts and orientations. ✅\n- Tree-specific options: cascades, subtree styling, split edges, etc. ✅\n- (WIP) Support uni- and bi-directional communication between graph object and plot object.🏗️\n\n## Authors\nFabio Zanini (https://fabilab.org)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffabilab%2Fiplotx","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffabilab%2Fiplotx","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffabilab%2Fiplotx/lists"}