{"id":23053158,"url":"https://github.com/fairdataihub/fair-amd-oct-paper-dataset","last_synced_at":"2026-03-20T00:22:33.569Z","repository":{"id":246998810,"uuid":"824793189","full_name":"fairdataihub/FAIR-AMD-OCT-paper-dataset","owner":"fairdataihub","description":"Dataset associated with the paper on FAIR assessment of AMD-related datasets containing OCT data","archived":false,"fork":false,"pushed_at":"2025-02-25T18:57:22.000Z","size":575,"stargazers_count":1,"open_issues_count":1,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-04-03T04:27:04.327Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"cc-by-4.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/fairdataihub.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-07-06T01:04:58.000Z","updated_at":"2025-02-25T18:54:53.000Z","dependencies_parsed_at":"2024-07-06T04:17:12.354Z","dependency_job_id":"01ad5aae-20fb-4a5b-84b1-1026d4f8f967","html_url":"https://github.com/fairdataihub/FAIR-AMD-OCT-paper-dataset","commit_stats":null,"previous_names":["fairdataihub/fair-amd-oct-paper-dataset"],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/fairdataihub/FAIR-AMD-OCT-paper-dataset","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fairdataihub%2FFAIR-AMD-OCT-paper-dataset","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fairdataihub%2FFAIR-AMD-OCT-paper-dataset/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fairdataihub%2FFAIR-AMD-OCT-paper-dataset/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fairdataihub%2FFAIR-AMD-OCT-paper-dataset/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/fairdataihub","download_url":"https://codeload.github.com/fairdataihub/FAIR-AMD-OCT-paper-dataset/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fairdataihub%2FFAIR-AMD-OCT-paper-dataset/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28532102,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-18T00:39:45.795Z","status":"online","status_checked_at":"2026-01-18T02:00:07.578Z","response_time":98,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-16T00:16:44.429Z","updated_at":"2026-01-18T06:51:20.631Z","avatar_url":"https://github.com/fairdataihub.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Contributors][contributors-shield]][contributors-url]\n[![Stargazers][stars-shield]][stars-url]\n[![Issues][issues-shield]][issues-url]\n[![CC BY 4.0][cc-by-shield]][cc-by]\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.12669651.svg)](https://doi.org/10.5281/zenodo.12669651)\n\n[contributors-shield]: https://img.shields.io/github/contributors/fairdataihub/FAIR-AMD-OCT-paper-dataset.svg?style=flat-square\n[contributors-url]: https://github.com/fairdataihub/FAIR-AMD-OCT-paper-dataset/graphs/contributors\n[stars-shield]: https://img.shields.io/github/stars/fairdataihub/FAIR-AMD-OCT-paper-dataset.svg?style=flat-square\n[stars-url]: https://github.com/fairdataihub/FAIR-AMD-OCT-paper-dataset/stargazers\n[issues-shield]: https://img.shields.io/github/issues/fairdataihub/FAIR-AMD-OCT-paper-dataset.svg?style=flat-square\n[issues-url]: https://github.com/fairdataihub/FAIR-AMD-OCT-paper-dataset/issues\n[cc-by]: http://creativecommons.org/licenses/by/4.0/\n[cc-by-image]: https://i.creativecommons.org/l/by/4.0/88x31.png\n[cc-by-shield]: https://img.shields.io/badge/License-CC%20BY%204.0-lightgrey.svg\n\n# Dataset: FAIR AMD OCT Datasets Paper\n\n## About\nThis is the dataset associated with the paper titled \"Publicly Available Imaging Datasets for Age-related Macular Degeneration: Evaluation according to the Findable, Accessible, Interoperable, Reproducible (FAIR) Principles\". Age-related macular degeneration (AMD), a leading cause of vision loss among older adults, affects more than 200 million people worldwide. In this paper, We evaluated openly available AMD-related datasets containing optical coherence tomography (OCT) data against the FAIR principles. This repository contains the data related to our evaluation. See this [inventory](https://github.com/fairdataihub/FAIR-AMD-OCT-paper-inventory) for all related resources, including the paper.\n\n## Standards followed\nThis dataset is structured according to the SPARC Data Structure v2.1 (c.f. [related manuscript](https://doi.org/10.1101/2021.02.10.430563) and [documentation](https://docs.sparc.science/docs/navigating-a-sparc-dataset#sparc-dataset-structure)) and curated using the SPARC data curation software [SODA v15.3.0](https://github.com/fairdataihub/SODA-for-SPARC).\n\n## Using the dataset\nSimply download this repository to use the data files. Alternatively, you can download it from [Zenodo](https://doi.org/10.5281/zenodo.12669651). The main data files are in the `primary` folder. There is a `manifest.xlsx` file in that folder that describe both files. The `derivative` folder contain supplementary figures associated with the paper, which are also described in the `manisfest.xlsx` file. See this [inventory](https://github.com/fairdataihub/FAIR-AMD-OCT-paper-inventory) for a link to the Jupyter notebook we developed to analyze and visualize the data.\n\n## License\nThis work is licensed under a\n[Creative Commons Attribution 4.0 International License][cc-by].\n\n[![CC BY 4.0][cc-by-image]][cc-by]\n\n## Feedback and contribution\nUse the [GitHub issues](https://github.com/fairdataihub/FAIR-AMD-OCT-paper-dataset) for submitting feedback or making suggestions. You can also fork the repository and submit a pull request with suggestions.\n\n## How to cite\nIf you use this dataset, please cite the related paper (it will be listed [here](https://github.com/fairdataihub/FAIR-AMD-OCT-paper-inventory) when available) and also cite this repository as (see on Zenodo for citing a specific version of this dataset):\n\n```bash\nGim, Nayoon, Ferguson, Alina, Blazes, Marian, Soundarajan, Sanjay, Gasimova, Aydan, Patel, Bhavesh \u0026 Lee, Cecilia. (2024). Dataset: FAIR AMD OCT Datasets Paper [Data set]. Zenodo. 10.5281/zenodo.12669651\n```\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffairdataihub%2Ffair-amd-oct-paper-dataset","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffairdataihub%2Ffair-amd-oct-paper-dataset","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffairdataihub%2Ffair-amd-oct-paper-dataset/lists"}