{"id":21822513,"url":"https://github.com/fastscape-lem/adascape","last_synced_at":"2025-04-14T03:52:33.808Z","repository":{"id":149998641,"uuid":"622868878","full_name":"fastscape-lem/adascape","owner":"fastscape-lem","description":"Simple adaptive speciation model as a component of FastScape-LEM","archived":false,"fork":false,"pushed_at":"2024-08-12T08:55:46.000Z","size":94033,"stargazers_count":3,"open_issues_count":0,"forks_count":2,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-03-27T17:51:53.528Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Jupyter 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Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![test build](https://github.com/fastscape-lem/adascape/actions/workflows/test.yml/badge.svg?branch=master)](https://github.com/fastscape-lem/adascape/actions)\n[![test notebooks](https://github.com/fastscape-lem/adascape/actions/workflows/test_notebooks.yml/badge.svg?branch=master)](https://github.com/fastscape-lem/adascape/actions)\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7794374.svg)](https://doi.org/10.5281/zenodo.7794374)\n\n\n\n# AdaScape: Adaptive speciation and landscape evolution model\n\nThe \"AdaScape\" package contains a simple adaptive speciation model written\nin Python that is coupled with the landscape evolution model [FastScape](https://fastscape.readthedocs.io/en/latest/).\n\n## Install\n\nThis package depends on Python (3.9 or later is recommended),\n[numpy](http://www.numpy.org/),\n[scipy](https://docs.scipy.org/doc/scipy/reference/),\n[pandas](https://pandas.pydata.org/),\n[fastscape](https://github.com/fastscape-lem/fastscape) and \n[orographic precipitation](https://github.com/fastscape-lem/orographic-precipitation) .\n\nThis package also provides a [dendropy](https://dendropy.org/) extension and \nuses [toytree](https://toytree.readthedocs.io/en/latest/index.html) \nto plot phylogenetic trees (optional dependencies).\n\nTo install the package locally, first clone this repository:\n\n``` shell\n$ git clone https://github.com/fastscape-lem/adascape.git\n$ cd adascape\n```\n\nThen run the command below (this will install numpy, scipy and pandas\nif those libraries are not yet installed in your environment):\n\n``` shell\n$ pip install .\n```\n\nTo install the package for development purpose, use the following\ncommand instead:\n\n``` shell\n$ pip install -e .\n```\n\n## Usage\n\nSome examples are shown in the ``notebooks`` folder (Jupyter Notebooks).\n\n## Tests\n\nTo run the tests, you need to have\n[pytest](https://docs.pytest.org/en/latest/) installed in your environment.\n\nThen simply run from this repository's root directory:\n\n``` shell\n$ pytest adascape -v\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffastscape-lem%2Fadascape","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffastscape-lem%2Fadascape","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffastscape-lem%2Fadascape/lists"}