{"id":51298896,"url":"https://github.com/fcampelo/epitopes2","last_synced_at":"2026-06-30T17:04:32.813Z","repository":{"id":364302601,"uuid":"625889434","full_name":"fcampelo/epitopes2","owner":"fcampelo","description":"Secret sauce for our epitope prediction and optimisation pipelines","archived":false,"fork":false,"pushed_at":"2026-06-20T15:33:59.000Z","size":389519,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2026-06-20T16:21:09.689Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/fcampelo.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2023-04-10T10:31:32.000Z","updated_at":"2026-06-20T15:34:02.000Z","dependencies_parsed_at":null,"dependency_job_id":null,"html_url":"https://github.com/fcampelo/epitopes2","commit_stats":null,"previous_names":["fcampelo/epitopes2"],"tags_count":6,"template":false,"template_full_name":null,"purl":"pkg:github/fcampelo/epitopes2","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fcampelo%2Fepitopes2","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fcampelo%2Fepitopes2/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fcampelo%2Fepitopes2/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fcampelo%2Fepitopes2/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/fcampelo","download_url":"https://codeload.github.com/fcampelo/epitopes2/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fcampelo%2Fepitopes2/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34975723,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-30T02:00:05.919Z","response_time":92,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-06-30T17:04:32.301Z","updated_at":"2026-06-30T17:04:32.807Z","avatar_url":"https://github.com/fcampelo.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# epitopes package\n\u003c!-- badges: start --\u003e\n  [![R-CMD-check](https://github.com/fcampelo/epitopes/workflows/R-CMD-check/badge.svg)](https://github.com/fcampelo/epitopes/actions)\n  \u003c!-- badges: end --\u003e\n\nProcessing, Feature Extraction and modelling of epitope data from the Immune Epitope Database ([IEDB](http://iedb.org))\n\n## Authors: \n- Felipe Campelo - [f.campelo@aston.ac.uk](mailto:f.campelo@aston.ac.uk), [fcampelo@gmail.com](mailto:fcampelo@gmail.com)\n\n## Collaborators:\n- Francisco Lobo - [franciscolobo@ufmg.br](mailto:franciscolobo@ufmg.br)\n\n## Previous contributors:\n- Jodie Ashford - [ashfojsm@aston.ac.uk](mailto:ashfojsm@aston.ac.uk)\n- Joao Reis-Cunha - [jaumlrc@gmail.com](jaumlrc@gmail.com)\n\n## Current version:\n- Consolidation of linear B-cell epitopes from the full IEDB database and \nretrieval of protein data from NBCI and Uniprot.\n- Organism- and taxon-based filtering of epitope data.\n- Data splitting for machine learning based on protein dissimilarity.\n- Extraction of observations for feature calculation using a sliding window representation.\n- Calculation of sequence-based features.\n- Read prediction output from other predictors (ABCPred, Bepipred 2.0, iBCE-EL, LBtope, SVMTrip)\n- Fitting classification models to data with hold-out set-based assessment.\n\n## Upcoming:\n- Plotting functions\n\n## Usage  \nCheck Vignette [Usage example](https://fcampelo.github.io/epitopes/articles/Usage-example.html) for a quick tutorial.\n\n***\n\nPlease report any bugs or suggestions directly in the repository [Issues](https://github.com/fcampelo/epitopes/issues) page.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffcampelo%2Fepitopes2","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffcampelo%2Fepitopes2","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffcampelo%2Fepitopes2/lists"}