{"id":23045581,"url":"https://github.com/fgcz/bfabricpy","last_synced_at":"2026-03-02T16:03:34.040Z","repository":{"id":211453717,"uuid":"30299984","full_name":"fgcz/bfabricPy","owner":"fgcz","description":"API and commad line tools for b-fabric","archived":false,"fork":false,"pushed_at":"2025-07-22T11:42:41.000Z","size":7983,"stargazers_count":5,"open_issues_count":15,"forks_count":1,"subscribers_count":7,"default_branch":"main","last_synced_at":"2025-07-22T13:23:28.516Z","etag":null,"topics":["api","bfabric","python3","rest-api","shiny-r","soap","wsdl"],"latest_commit_sha":null,"homepage":"https://fgcz.github.io/bfabricPy/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/fgcz.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"COPYING","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2015-02-04T13:27:27.000Z","updated_at":"2025-07-22T11:40:40.000Z","dependencies_parsed_at":"2024-01-29T10:32:00.930Z","dependency_job_id":"ee1bb7d3-76ce-4b4e-a839-42483ee1ee37","html_url":"https://github.com/fgcz/bfabricPy","commit_stats":null,"previous_names":["fgcz/bfabricpy"],"tags_count":77,"template":false,"template_full_name":null,"purl":"pkg:github/fgcz/bfabricPy","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2FbfabricPy","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2FbfabricPy/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2FbfabricPy/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2FbfabricPy/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/fgcz","download_url":"https://codeload.github.com/fgcz/bfabricPy/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2FbfabricPy/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270500008,"owners_count":24595150,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-14T02:00:10.309Z","response_time":75,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["api","bfabric","python3","rest-api","shiny-r","soap","wsdl"],"created_at":"2024-12-15T21:27:07.339Z","updated_at":"2026-03-02T16:03:33.936Z","avatar_url":"https://github.com/fgcz.png","language":"Python","readme":"# bfabricPy\n\n[![PR Checks](https://github.com/fgcz/bfabricPy/actions/workflows/run_unit_tests.yml/badge.svg)](https://github.com/fgcz/bfabricPy/actions/workflows/run_unit_tests.yml)\n[![Nightly Integration Tests](https://github.com/fgcz/bfabricPy-tests/actions/workflows/nightly_tests.yml/badge.svg)](https://github.com/fgcz/bfabricPy-tests/actions/workflows/nightly_tests.yml)\n[![EDBT'10](https://img.shields.io/badge/EDBT-10.1145%2F1739041.1739135-brightgreen)](https://doi.org/10.1145/1739041.1739135)\n[![JIB](https://img.shields.io/badge/JIB-10.1515%2Fjib.2022.0031-brightgreen)](https://doi.org/10.1515/jib-2022-0031)\n[![PyPI - bfabric](https://img.shields.io/pypi/v/bfabric?label=bfabric\u0026logo=python\u0026logoColor=white)](https://pypi.org/project/bfabric/)\n[![PyPI - bfabric-scripts](https://img.shields.io/pypi/v/bfabric-scripts?label=bfabric-scripts\u0026logo=python\u0026logoColor=white)](https://pypi.org/project/bfabric-scripts/)\n[![PyPI - bfabric-app-runner](https://img.shields.io/pypi/v/bfabric-app-runner?label=bfabric-app-runner\u0026logo=python\u0026logoColor=white)](https://pypi.org/project/bfabric-app-runner/)\n\n## Documentation\n\n| Package            | Link                                                                 | Change Log                                                                                                               |\n| ------------------ | -------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------ |\n| bfabric            | [https://fgcz.github.io/bfabricPy](https://fgcz.github.io/bfabricPy) | [bfabric/docs/changelog.md](https://github.com/fgcz/bfabricPy/blob/main/bfabric/docs/changelog.md)                       |\n| bfabric-scripts    | [https://fgcz.github.io/bfabricPy](https://fgcz.github.io/bfabricPy) | [bfabric_scripts/docs/changelog.md](https://github.com/fgcz/bfabricPy/blob/main/bfabric_scripts/docs/changelog.md)       |\n| bfabric-app-runner | https://fgcz.github.io/bfabricPy/app_runner/                         | [bfabric_app_runner/docs/changelog.md](https://github.com/fgcz/bfabricPy/blob/main/bfabric_app_runner/docs/changelog.md) |\n\n## Introduction\n\nThis package implements a Python interface to the [B-Fabric](https://fgcz-bfabric.uzh.ch/bfabric/) system.\nSeveral pieces of functionality are available:\n\n- Python API:\n    - General client for all B-Fabric web service operations (CRUD) and configuration management.\n    - A relational API for low-boilerplate read access to the B-Fabric system.\n- Scripts: Several scripts we use more or less frequently to interact with the system.\n- A REST API: A REST API to interact with the B-Fabric system. This allows us to interact with B-Fabric from R\n    using [bfabricShiny](https://github.com/cpanse/bfabricShiny).\n\n## Howto cite?\n\nPanse, Christian, Trachsel, Christian and Türker, Can. \"Bridging data management platforms and visualization tools to enable ad-hoc and smart analytics in life sciences\" Journal of Integrative Bioinformatics, 2022, pp. 20220031. [doi: 10.1515/jib-2022-0031](https://doi.org/10.1515/jib-2022-0031).\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffgcz%2Fbfabricpy","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffgcz%2Fbfabricpy","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffgcz%2Fbfabricpy/lists"}