{"id":13681079,"url":"https://github.com/fgcz/rawDiag","last_synced_at":"2025-04-30T03:30:32.228Z","repository":{"id":71304625,"uuid":"125046811","full_name":"fgcz/rawDiag","owner":"fgcz","description":"Brings Orbitrap mass spectrometry data to life;  multi-platform, fast and colorful R package","archived":false,"fork":false,"pushed_at":"2024-05-01T09:10:36.000Z","size":180354,"stargazers_count":36,"open_issues_count":39,"forks_count":11,"subscribers_count":5,"default_branch":"devel","last_synced_at":"2025-04-19T16:32:26.004Z","etag":null,"topics":["fast","mass-spectrometry","multiplatform","orbitrap","r","rpackage","visualization"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/rawDiag","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/fgcz.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-03-13T12:16:47.000Z","updated_at":"2024-05-01T09:10:40.000Z","dependencies_parsed_at":"2024-05-01T11:17:04.034Z","dependency_job_id":null,"html_url":"https://github.com/fgcz/rawDiag","commit_stats":null,"previous_names":[],"tags_count":6,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2FrawDiag","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2FrawDiag/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2FrawDiag/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2FrawDiag/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/fgcz","download_url":"https://codeload.github.com/fgcz/rawDiag/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":251634999,"owners_count":21619124,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["fast","mass-spectrometry","multiplatform","orbitrap","r","rpackage","visualization"],"created_at":"2024-08-02T13:01:25.924Z","updated_at":"2025-04-30T03:30:31.801Z","avatar_url":"https://github.com/fgcz.png","language":"R","funding_links":[],"categories":["5. Raw Data Analysis"],"sub_categories":["Table of Contents"],"readme":"[![JPR](https://img.shields.io/badge/JPR-10.1021%2Facs.jproteome.8b00173-brightgreen)](http://dx.doi.org/10.1021/acs.jproteome.8b00173)\n\n# rawDiag \n\n![octopussy](vignettes/octopussy.png)\n\nan R package supporting rational LC-MS method optimization for bottom-up proteomics on multiple OS platforms\n\nmain features:\n \n1. **multiplatform** and **fast** reading through using [The New RawFileReader from Thermo Fisher Scientific](http://planetorbitrap.com/rawfilereader).\n2. uses latest visualization generation through using Rs [ggplot2](https://cran.r-project.org/package=ggplot2) package.\n3. provides an R interface to your instrument raw data.\n4. ships with an example [shiny application](http://fgcz-ms-shiny.uzh.ch:8080/bfabric_rawDiag/).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffgcz%2FrawDiag","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffgcz%2FrawDiag","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffgcz%2FrawDiag/lists"}