{"id":13681094,"url":"https://github.com/fgcz/rawrr","last_synced_at":"2025-04-04T20:13:59.891Z","repository":{"id":45856330,"uuid":"290160648","full_name":"fgcz/rawrr","owner":"fgcz","description":"Access Orbitrap data in R lang using C# .NET assembly - bioconductor package","archived":false,"fork":false,"pushed_at":"2024-12-04T14:27:35.000Z","size":3303,"stargazers_count":56,"open_issues_count":13,"forks_count":9,"subscribers_count":6,"default_branch":"devel","last_synced_at":"2025-03-28T19:09:33.862Z","etag":null,"topics":["fast","mass-spectrometry","multiplatform","orbitrap-ms","rpackage"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/rawrr/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/fgcz.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-08-25T08:37:00.000Z","updated_at":"2025-01-03T04:24:17.000Z","dependencies_parsed_at":"2023-02-14T06:16:11.085Z","dependency_job_id":"494702be-4ca0-4463-9994-3b014e02b90e","html_url":"https://github.com/fgcz/rawrr","commit_stats":{"total_commits":782,"total_committers":7,"mean_commits":"111.71428571428571","dds":0.3695652173913043,"last_synced_commit":"e45b9c0eace3ea5fb0dfb0d74bdc39c52c27fe88"},"previous_names":[],"tags_count":5,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2Frawrr","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2Frawrr/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2Frawrr/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fgcz%2Frawrr/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/fgcz","download_url":"https://codeload.github.com/fgcz/rawrr/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247242680,"owners_count":20907134,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["fast","mass-spectrometry","multiplatform","orbitrap-ms","rpackage"],"created_at":"2024-08-02T13:01:26.175Z","updated_at":"2025-04-04T20:13:59.865Z","avatar_url":"https://github.com/fgcz.png","language":"R","funding_links":[],"categories":["5. Raw Data Analysis"],"sub_categories":["Table of Contents"],"readme":"[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)\n[![JPR](https://img.shields.io/badge/JPR-10.1021%2Facs.jproteome.0c00866-brightgreen)](http://dx.doi.org/10.1021/acs.jproteome.0c00866)\n[![codecov](https://codecov.io/gh/fgcz/rawrr/branch/master/graph/badge.svg?token=OO4Y7G4UUX)](https://codecov.io/gh/fgcz/rawrr)\n[![bioc-check](https://bioconductor.org/shields/build/devel/bioc/rawrr.svg)](http://bioconductor.org/checkResults/devel/bioc-LATEST/rawrr/)\n![Downloads](https://img.shields.io/github/downloads/fgcz/rawrr/total)\n\n![rawrrHexSticker](rawrr_logo.png)\n\n# rawrr\n\nThe package provides access to proprietary Thermo Fisher Scientific Orbitrap instrument data as a stand-alone R package or serves as [MsRawFileReaderBackend](https://github.com/cpanse/MsBackendRawFileReader) for the Bioconductor [Spectra](https://bioconductor.org/packages/Spectra/) package.\nrawrr wraps the functionality of the [RawFileReader](https://github.com/thermofisherlsms/RawFileReader) [.NET assembly](https://www.mono-project.com/docs/advanced/assemblies-and-the-gac/). \nTest files are provided by the [tartare](https://bioconductor.org/packages/tartare/) ExperimentData package.\n\n## Install\n\nPlease follow the [INSTALL](https://bioconductor.org/packages/release/bioc/install/rawrr/INSTALL) instructions provided through \n\nhttps://bioconductor.org/packages/rawrr/\n\nThe latest source package build [bioconductor devel branch](https://bioconductor.org/packages/devel/bioc/html/rawrr.html) can be found through\n\nhttps://fgcz-ms.uzh.ch/~cpanse/rawrr/\n\n## Manuscript\n\nhttp://dx.doi.org/10.1021/acs.jproteome.0c00866\n\n## Talks\n\n- [rawrr - invoking managed code using ThermoFisher.CommonCore.RawFileReader;](http://fgcz-ms.uzh.ch/~cpanse/talks/20211123-rawrrRcpp_MetaRbolimics2021.html) presentaton at \n[3rd de.NBI / ELIXIR-DE metaRbolomics Hackathon 2021](https://www.denbi.de/news/1299-3rd-de-nbi-elixir-de-metarbolomics-hackathon) in Lutherstadt Wittenberg (22-24 November); [code snippets](https://github.com/cpanse/rawrrRcpp).\n\n- [MsRawFileReaderBackend](https://bioconductor.org/packages/MsBackendRawFileReader/) presentaton at\n[European Biocondutor Meeting, de Duve Institute, UCLouvain, Campus de Woluw ́e Brussels, Belgium, Dec 2019](http://fgcz-ms.uzh.ch/~cpanse/talks/rawR_EuroBioc2019_Brussels_88c9.pdf)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffgcz%2Frawrr","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffgcz%2Frawrr","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffgcz%2Frawrr/lists"}