{"id":33051362,"url":"https://github.com/filip-husnik/genome-plots-processing","last_synced_at":"2025-11-18T21:01:05.738Z","repository":{"id":111921944,"uuid":"117149401","full_name":"filip-husnik/genome-plots-processing","owner":"filip-husnik","description":"Processing scripts to visualize bacterial genome alignments","archived":false,"fork":false,"pushed_at":"2020-02-05T00:25:43.000Z","size":11558,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2024-07-11T20:32:20.830Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Processing","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/filip-husnik.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2018-01-11T20:24:38.000Z","updated_at":"2024-02-14T16:31:54.000Z","dependencies_parsed_at":null,"dependency_job_id":"dc3c988a-9961-491b-a690-81d6f576640f","html_url":"https://github.com/filip-husnik/genome-plots-processing","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/filip-husnik/genome-plots-processing","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/filip-husnik%2Fgenome-plots-processing","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/filip-husnik%2Fgenome-plots-processing/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/filip-husnik%2Fgenome-plots-processing/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/filip-husnik%2Fgenome-plots-processing/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/filip-husnik","download_url":"https://codeload.github.com/filip-husnik/genome-plots-processing/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/filip-husnik%2Fgenome-plots-processing/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":285138471,"owners_count":27121052,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-11-18T02:00:05.759Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-11-14T03:00:27.111Z","updated_at":"2025-11-18T21:01:05.685Z","avatar_url":"https://github.com/filip-husnik.png","language":"Processing","funding_links":[],"categories":["Comparative"],"sub_categories":[],"readme":"# Processing scripts to visualize bacterial genome alignments as linear (instead of circular, e.g. by Circos)\n\nThis repository contains [Processing](https://processing.org/) scripts to make figures such as Figure 1 from [Husnik \u0026 McCutcheon, PNAS 2016](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5027413/). It's still a work in progress, but my goal is to make these scripts more flexible in the near future.\n\nHusnik F \u0026 McCutcheon JP: Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis. [Proc Natl Acad Sci U S A 2016, 113(37): E5416–E5424](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5027413/).\n \n ![alt text](https://github.com/filip-husnik/2016-PNAS-figure1/blob/master/Fig1_final.png)\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffilip-husnik%2Fgenome-plots-processing","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffilip-husnik%2Fgenome-plots-processing","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffilip-husnik%2Fgenome-plots-processing/lists"}