{"id":25982625,"url":"https://github.com/fiuner-lica/micro-stitch","last_synced_at":"2025-10-12T00:42:10.327Z","repository":{"id":211892771,"uuid":"467145912","full_name":"FIUNER-LICA/micro-stitch","owner":"FIUNER-LICA","description":"Implementation of an innovative tool designed for real-time panoramic imaging in an optical microscopy environment.","archived":false,"fork":false,"pushed_at":"2025-02-13T12:25:23.000Z","size":254501,"stargazers_count":1,"open_issues_count":1,"forks_count":0,"subscribers_count":1,"default_branch":"javierdz-revision","last_synced_at":"2025-02-13T13:34:06.135Z","etag":null,"topics":["computer-vision","microscopy-images","opencv","python3","qml"],"latest_commit_sha":null,"homepage":"https://fiuner-lica.github.io/micro-stitch/","language":"QML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/FIUNER-LICA.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-03-07T15:14:28.000Z","updated_at":"2025-02-13T12:25:28.000Z","dependencies_parsed_at":"2024-03-19T07:04:54.993Z","dependency_job_id":null,"html_url":"https://github.com/FIUNER-LICA/micro-stitch","commit_stats":null,"previous_names":["grupo-de-computacion-de-la-fi-uner/stitching-hsi","fiuner-lica/stitching-hsi"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FIUNER-LICA%2Fmicro-stitch","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FIUNER-LICA%2Fmicro-stitch/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FIUNER-LICA%2Fmicro-stitch/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FIUNER-LICA%2Fmicro-stitch/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/FIUNER-LICA","download_url":"https://codeload.github.com/FIUNER-LICA/micro-stitch/tar.gz/refs/heads/javierdz-revision","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":242002931,"owners_count":20056174,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["computer-vision","microscopy-images","opencv","python3","qml"],"created_at":"2025-03-05T09:37:50.746Z","updated_at":"2025-10-12T00:42:05.296Z","avatar_url":"https://github.com/FIUNER-LICA.png","language":"QML","funding_links":[],"categories":[],"sub_categories":[],"readme":"\n\n## Overview\n\nThis repository contains the implementation of an innovative tool designed for real-time panoramic imaging in an optical microscopy environment. The tool aims to overcome limitations associated with conventional panoramic image construction techniques, offering an efficient and high-quality solution through the use of computer vision algorithms.\n\n[![DOI](https://zenodo.org/badge/467145912.svg)](https://doi.org/10.5281/zenodo.14143635)\n\n## Motivation\n\nIn the field of optical microscopy, analysts commonly rely on a macroscopic reference frame to locate specific details in samples. Often, computational tools are employed to construct high-resolution panoramic images from lower-resolution captures. However, this traditional process is tedious, time-consuming, and often yields low-quality results in terms of image resolution.\n\n## Key Features\n\n- **Continuous Image Acquisition:** The tool employs an innovative strategy of continuously forming the image while traversing the sample by moving the microscope stage.\n\n- **Panoramic Construction Algorithm:** An advanced algorithm based on computer vision tools has been developed for efficient real-time panoramic image construction.\n\n- **Testing and Validation:** The repository includes tests conducted in simulated environments and a real optical microscope. Simulated tests have shown promising results, demonstrating the ability to reconstruct images accurately. Tests on the optical microscope have yielded encouraging results in terms of speed and image quality.\n\n- **Identification of Intrinsic Aberrations:** Tests on the optical microscope have also allowed the identification of sources of intrinsic instrument aberrations, contributing to improving the technique's robustness.\n\n## Compatibility\n\nThis project has been tested and is compatible with the following environment:\n\n- **Operating System:** Windows\n- **Python Version:** 3.x\n\n\n# Clonning de repository\n\n1 - Clone the repository\n\n2 - Create a virtual enviroment with:\n```bash\n    python3 -m venv /path/name_venv\n```\n\n3 - Activate venv with (Windows):\n    \n    .\\.name_venv\\Scripts\\Activate.ps1\n\n4 - Install dependencies\n\n    py -m pip install -r requirements.txt\n\n## User Interface\n\nThe tool features a user-friendly interface built with QML and Qt.\n\n### Video demo\n[![Micro Stitch](https://i3.ytimg.com/vi/4HrGwN9sFaQ/hqdefault.jpg)](https://youtu.be/4HrGwN9sFaQ)\n\n\nTo launch the tool with the graphical user interface, run:\n\n```bash\ncd micro_stitch\npython main.py\n```\n\n## Contributions and Issues\nContributions are welcome! Please fork the repository and create a pull request.\nIf you encounter any issues, please open a new issue here.\n## License\nThis project is licensed under the MIT license - see the LICENSE.md file for details.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffiuner-lica%2Fmicro-stitch","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffiuner-lica%2Fmicro-stitch","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffiuner-lica%2Fmicro-stitch/lists"}