{"id":18480564,"url":"https://github.com/fjossinet/dockerna","last_synced_at":"2026-02-11T09:03:54.364Z","repository":{"id":77695606,"uuid":"57376783","full_name":"fjossinet/DockeRNA","owner":"fjossinet","description":"Docker images providing fully configured RNA algorithms","archived":false,"fork":false,"pushed_at":"2016-04-29T10:43:54.000Z","size":1,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-06-11T14:59:39.520Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/fjossinet.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-04-29T10:29:47.000Z","updated_at":"2018-01-19T06:55:29.000Z","dependencies_parsed_at":null,"dependency_job_id":"2c67deb0-f1f2-4163-9523-aee2f398cfe9","html_url":"https://github.com/fjossinet/DockeRNA","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/fjossinet/DockeRNA","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fjossinet%2FDockeRNA","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fjossinet%2FDockeRNA/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fjossinet%2FDockeRNA/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fjossinet%2FDockeRNA/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/fjossinet","download_url":"https://codeload.github.com/fjossinet/DockeRNA/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fjossinet%2FDockeRNA/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273490522,"owners_count":25115163,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-06T12:19:17.223Z","updated_at":"2026-02-11T09:03:49.344Z","avatar_url":"https://github.com/fjossinet.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# DockeRNA\n\nThis page details some of my Docker images. These images provides fully configured RNA algorithms to be used with [the RNA Science Toolbox](http://fjossinet.github.io/RNA-Science-Toolbox/).\n\n## [fjossinet/assemble2](https://hub.docker.com/r/fjossinet/assemble2/)\n\nThis image provides the following algorithms:\n\n* [RNAVIEW](http://ndbserver.rutgers.edu/ndbmodule/services/download/rnaview.html)\n* [Vienna RNA package](https://www.tbi.univie.ac.at/RNA/)\n* [foldalign](http://rth.dk/resources/foldalign/)\n* [LocARNA](http://rna.informatik.uni-freiburg.de/LocARNA/)\n\nThis image has also been designed to provide the Web services needed by the RNA 3D modeling tool [Assemble2](http://www.bioinformatics.org/assemble/).\n\n## [fjossinet/rnaseq](https://hub.docker.com/r/fjossinet/rnaseq/)\n\nThis image provides the following algorithms:\n\n* [SAMtools](http://samtools.sourceforge.net)\n* [Tophat2](https://ccb.jhu.edu/software/tophat/)\n* [Bowtie2](http://bowtie-bio.sourceforge.net/bowtie2/index.shtml)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffjossinet%2Fdockerna","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffjossinet%2Fdockerna","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffjossinet%2Fdockerna/lists"}