{"id":18480520,"url":"https://github.com/fjossinet/kaknas","last_synced_at":"2025-07-03T09:03:47.165Z","repository":{"id":77695675,"uuid":"430612086","full_name":"fjossinet/kaknas","owner":"fjossinet","description":"A JavaFX app to visualize RNA alignments from Rfam database.","archived":false,"fork":false,"pushed_at":"2021-11-22T12:35:39.000Z","size":4,"stargazers_count":6,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-03-23T16:11:35.764Z","etag":null,"topics":["bioinformatics","javafx","kotlin","rna-alignment","rna-structure","visualization"],"latest_commit_sha":null,"homepage":"","language":"Kotlin","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/fjossinet.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-11-22T07:55:05.000Z","updated_at":"2023-11-07T09:49:57.000Z","dependencies_parsed_at":null,"dependency_job_id":"a11c912b-08be-4745-9907-0c5c572dbf1d","html_url":"https://github.com/fjossinet/kaknas","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fjossinet%2Fkaknas","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fjossinet%2Fkaknas/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fjossinet%2Fkaknas/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fjossinet%2Fkaknas/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/fjossinet","download_url":"https://codeload.github.com/fjossinet/kaknas/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247881994,"owners_count":21011973,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","javafx","kotlin","rna-alignment","rna-structure","visualization"],"created_at":"2024-11-06T12:19:02.042Z","updated_at":"2025-04-08T16:31:23.750Z","avatar_url":"https://github.com/fjossinet.png","language":"Kotlin","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Kaknas\n\nKaknas is a JavaFX graphical tool to visualize and manipulate RNA alignments from the [Rfam](https://rfam.org) database. It is powered with [RNArtistCore](https://github.com/fjossinet/RNArtistCore). \n\nFor a given RNA family, Kaknas will allow you to more easily visualize:\n* the consensus structure\n* the secondary structure for a given species\n* the evolution of the secondary structure between species, from a single structural domain to the full 2D\n \nFor each RNA family available in the [Rfam](https://rfam.org) database, Kaknas plots the secondary structures according to a layout curated and improved with [RNArtist](https://github.com/fjossinet/RNArtist).\n\n### Why is it named \"Kaknas\"?\n\nRNA alignments from the [Rfam](https://rfam.org) database are described with the [Stockholm format](https://en.wikipedia.org/wiki/Stockholm_format). Kaknas is a [telecommunications tower](https://en.wikipedia.org/wiki/Kaknästornet) which gives you a fantastic view of Stockholm.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffjossinet%2Fkaknas","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffjossinet%2Fkaknas","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffjossinet%2Fkaknas/lists"}