{"id":37748369,"url":"https://github.com/fmi-faim/fmi-ij2-plugins","last_synced_at":"2026-01-16T14:19:18.014Z","repository":{"id":52716250,"uuid":"72086675","full_name":"fmi-faim/fmi-ij2-plugins","owner":"fmi-faim","description":"A collection of ImageJ2 plugins for use with KNIME","archived":false,"fork":false,"pushed_at":"2024-05-02T11:03:25.000Z","size":191,"stargazers_count":7,"open_issues_count":3,"forks_count":3,"subscribers_count":2,"default_branch":"master","last_synced_at":"2024-05-02T21:13:25.968Z","etag":null,"topics":["bio-image-analysis","image-processing","imagej","knime"],"latest_commit_sha":null,"homepage":"","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"lgpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/fmi-faim.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-10-27T08:20:08.000Z","updated_at":"2024-05-02T11:03:29.000Z","dependencies_parsed_at":"2024-05-02T08:47:09.466Z","dependency_job_id":"840fc347-d3dd-4296-8d8b-9fcad89f2838","html_url":"https://github.com/fmi-faim/fmi-ij2-plugins","commit_stats":null,"previous_names":[],"tags_count":27,"template":false,"template_full_name":null,"purl":"pkg:github/fmi-faim/fmi-ij2-plugins","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fmi-faim%2Ffmi-ij2-plugins","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fmi-faim%2Ffmi-ij2-plugins/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fmi-faim%2Ffmi-ij2-plugins/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fmi-faim%2Ffmi-ij2-plugins/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/fmi-faim","download_url":"https://codeload.github.com/fmi-faim/fmi-ij2-plugins/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fmi-faim%2Ffmi-ij2-plugins/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28479375,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-16T11:59:17.896Z","status":"ssl_error","status_checked_at":"2026-01-16T11:55:55.838Z","response_time":107,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bio-image-analysis","image-processing","imagej","knime"],"created_at":"2026-01-16T14:19:17.948Z","updated_at":"2026-01-16T14:19:18.004Z","avatar_url":"https://github.com/fmi-faim.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"# fmi-ij2-plugins\n\n[![NodePit](https://img.shields.io/badge/NodePit-FMI%20KNIME%20Plugins-yellow.svg)](https://nodepit.com/iu/ch.fmi.knime.plugins)\n[![GitHub Release](https://img.shields.io/github/release/fmi-faim/fmi-ij2-plugins.svg)](https://github.com/fmi-faim/fmi-ij2-plugins/releases)\n[![Build Status](https://github.com/fmi-faim/fmi-ij2-plugins/actions/workflows/build-main.yml/badge.svg)](https://github.com/fmi-faim/fmi-ij2-plugins/actions/workflows/build-main.yml)\n[![Codacy Badge](https://app.codacy.com/project/badge/Grade/97b75dbd7ff241888fb2339fdb5dcebc)](https://www.codacy.com/gh/fmi-faim/fmi-ij2-plugins/dashboard?utm_source=github.com\u0026amp;utm_medium=referral\u0026amp;utm_content=fmi-faim/fmi-ij2-plugins\u0026amp;utm_campaign=Badge_Grade)\n[![DOI](https://zenodo.org/badge/72086675.svg)](https://zenodo.org/badge/latestdoi/72086675)\n\n## Installation in KNIME\n\nTo use these plugins in KNIME, please activate the update site `https://community.knime.org/download/ch.fmi.knime.plugins.update/` as well as the [KNIME Image Processing Nightly Builds](https://www.knime.com/wiki/knime-image-processing-nightly-build).\n\n## Manual installation in KNIME\n\nIf you want to install this plugin manually via the KNIME ImageJ2 integration, you'll have to install the `fmi-ij2-plugins` jar file as well as all the dependencies listed below.\n\n1. Install `fmi-ij2-plugins.jar` from the [latest release](https://github.com/fmi-faim/fmi-ij2-plugins/releases/latest) via *File \u003e Preferences* into *KNIME \u003e Image Processing Plugin \u003e ImageJ2 Plugin Installation*.\n\n2. The following additional files (dependencies) are required:\n\n| Project | Download `jar` from maven.imagej.net |\n| --- | --- |\n| [`AnalyzeSkeleton_`](https://github.com/fiji/AnalyzeSkeleton/) | [`AnalyzeSkeleton_-3.4.2.jar`](http://maven.imagej.net/service/local/repositories/releases/content/sc/fiji/AnalyzeSkeleton_/3.4.2/AnalyzeSkeleton_-3.4.2.jar) |\n| [`Descriptor_based_registration`](https://github.com/fiji/Descriptor_based_registration) | [`Descriptor_based_registration-2.1.7.jar`](http://maven.imagej.net/service/local/repositories/releases/content/sc/fiji/Descriptor_based_registration/2.1.7/Descriptor_based_registration-2.1.7.jar) |\n| [`Fiji_Plugins`](https://github.com/fiji/Fiji_Plugins) | [`Fiji_Plugins-3.1.1.jar`](http://maven.imagej.net/service/local/repositories/releases/content/sc/fiji/Fiji_Plugins/3.1.1/Fiji_Plugins-3.1.1.jar) |\n| [`fmi-trackmate-addons`](https://github.com/fmi-faim/fmi-trackmate-addons) | [`fmi-trackmate-addons-0.1.2.jar`](http://maven.imagej.net/service/local/repositories/releases/content/ch/fmi/fmi-trackmate-addons/0.1.2/fmi-trackmate-addons-0.1.2.jar) |\n| [`guava`](https://github.com/google/guava) | [`guava-21.0.jar`](http://maven.imagej.net/service/local/repositories/central/content/com/google/guava/guava/21.0/guava-21.0.jar) |\n| `jdom2` | [`jdom2-2.0.6.jar`](http://maven.imagej.net/service/local/repositories/bedatadriven/content/org/jdom/jdom2/2.0.6/jdom2-2.0.6.jar) |\n| [`jgrapht-core`](https://github.com/jgrapht/jgrapht) | [`jgrapht-core-1.4.0.jar`](http://maven.imagej.net/service/local/repositories/central/content/org/jgrapht/jgrapht-core/1.4.0/jgrapht-core-1.4.0.jar) |\n| [`jts-core`](https://github.com/locationtech/jts) | [`jts-core-1.18.1.jar`](https://repo.maven.apache.org/maven2/org/locationtech/jts/jts-core/1.18.1/jts-core-1.18.1.jar) |\n| [`legacy-imglib1`](https://github.com/fiji/legacy-imglib1) | [`legacy-imglib1-1.1.9.jar`](http://maven.imagej.net/service/local/repositories/releases/content/sc/fiji/legacy-imglib1/1.1.9/legacy-imglib1-1.1.9.jar) |\n| [`mpicbg`](https://github.com/axtimwalde/mpicbg/tree/master/mpicbg) | [`mpicbg-1.4.1.jar`](http://maven.imagej.net/service/local/repositories/releases/content/mpicbg/mpicbg/1.4.1/mpicbg-1.4.1.jar) |\n| [`SPIM_Registration`](https://github.com/fiji/SPIM_Registration) | [`SPIM_Registration-5.0.21.jar`](http://maven.imagej.net/service/local/repositories/releases/content/sc/fiji/SPIM_Registration/5.0.21/SPIM_Registration-5.0.21.jar) |\n| [`TrackMate_`](https://github.com/fiji/TrackMate) | [`TrackMate_-6.0.1.jar`](http://maven.imagej.net/service/local/repositories/releases/content/sc/fiji/TrackMate_/6.0.1/TrackMate_-6.0.1.jar) |\n| [`TrackMate_extras`](https://github.com/tinevez/TrackMate-extras) | [`TrackMate_extras-0.0.4.jar`](http://maven.imagej.net/service/local/repositories/releases/content/org/scijava/TrackMate_extras/0.0.4/TrackMate_extras-0.0.4.jar) |\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffmi-faim%2Ffmi-ij2-plugins","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffmi-faim%2Ffmi-ij2-plugins","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffmi-faim%2Ffmi-ij2-plugins/lists"}