{"id":15555736,"url":"https://github.com/fpaskali/madapp","last_synced_at":"2025-06-30T06:35:35.413Z","repository":{"id":298913902,"uuid":"1000973790","full_name":"fpaskali/MADApp","owner":"fpaskali","description":null,"archived":false,"fork":false,"pushed_at":"2025-06-13T14:47:48.000Z","size":2182,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2025-06-13T15:47:33.489Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/fpaskali.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-06-12T15:55:37.000Z","updated_at":"2025-06-13T14:47:51.000Z","dependencies_parsed_at":"2025-06-13T15:47:35.494Z","dependency_job_id":"061e1133-78a5-4fef-a25a-aeb64c1c823e","html_url":"https://github.com/fpaskali/MADApp","commit_stats":null,"previous_names":["fpaskali/madapp"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/fpaskali/MADApp","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fpaskali%2FMADApp","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fpaskali%2FMADApp/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fpaskali%2FMADApp/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fpaskali%2FMADApp/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/fpaskali","download_url":"https://codeload.github.com/fpaskali/MADApp/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fpaskali%2FMADApp/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":262724623,"owners_count":23354287,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-02T15:10:29.047Z","updated_at":"2025-06-30T06:35:35.396Z","avatar_url":"https://github.com/fpaskali.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"\n## \u003cimg src=\"hex-MADApp.png\" alt=\"drawing\" width=\"200\"/\u003e Microarray Data Analysis Application (MADApp)\nThe repository of the development version of shiny application MADApp\n\n[![License: LGPL v3](https://img.shields.io/badge/License-LGPL%20v3-blue.svg)](https://www.gnu.org/licenses/lgpl-3.0)\n[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)\n![Linux](https://img.shields.io/badge/Linux-FCC624?style=flat\u0026logo=linux\u0026logoColor=black)\n[![Windows](https://badgen.net/badge/icon/windows?icon=windows\u0026label)](https://microsoft.com/windows/)\n\n## Description\nMicroarray Data Analysis Application is an application for a quantification of microarray images.\n\n## Installation\nTo install the required packages, load the project from RStudio and run the following command in the R console:\n```{r}\nrenv::restore()\n```\nAlternatively, you can open terminal in the MADApp root directory, start R and use the same command in R console.\n\n## System dependencies\nCertain R packages require system libraries to be preinstalled. Below are the commands to install these libraries for different Linux distributions:\n\n### Debian/Ubuntu\n\nUse the following command to install the necessary dependencies:\n```{bash}\nsudo apt install libtiff-dev libfftw3-dev libcurl4-openssl-dev libssl-dev libxml2-dev\n```\n\n### Fedora/RHEL\n\nUse this command to install the dependencies:\n```{bash}\nsudo dnf install libtiff-devel fftw-devel libcurl-devel openssl-devel libxml2-devel\n```\n\n* If you encounter errors in the installation process or additional dependencies are needed, please open an issue to report them.\n\n## Start App\nTo start the application from RStudio, load the project and run the following command in the R console:\n```{r}\nshiny::runApp()\n```\n\n## Preview\n\n![tab1](preview/preview_1.png)\n![tab2](preview/preview_2.png)\n![tab3](preview/preview_3.png)\n![tab4](preview/preview_4.png)\n![tab5](preview/preview_5.png)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffpaskali%2Fmadapp","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffpaskali%2Fmadapp","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffpaskali%2Fmadapp/lists"}