{"id":23957307,"url":"https://github.com/fperraudeau/gphmm","last_synced_at":"2025-09-12T15:32:07.949Z","repository":{"id":77523505,"uuid":"89629866","full_name":"fperraudeau/gphmm","owner":"fperraudeau","description":"Generalized Pair Hidden Markov Chain Model (GPHMM)","archived":false,"fork":false,"pushed_at":"2017-12-05T03:37:26.000Z","size":54,"stargazers_count":1,"open_issues_count":0,"forks_count":2,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-01-06T16:54:19.652Z","etag":null,"topics":["hmm","hmm-model","hmm-viterbi-algorithm","sequence-alignment","sequence-to-sequence"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/fperraudeau.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-04-27T18:48:06.000Z","updated_at":"2017-11-27T01:40:58.000Z","dependencies_parsed_at":null,"dependency_job_id":"81991fc2-60ba-4295-b888-ccac959379cf","html_url":"https://github.com/fperraudeau/gphmm","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/fperraudeau/gphmm","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fperraudeau%2Fgphmm","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fperraudeau%2Fgphmm/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fperraudeau%2Fgphmm/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fperraudeau%2Fgphmm/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/fperraudeau","download_url":"https://codeload.github.com/fperraudeau/gphmm/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fperraudeau%2Fgphmm/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274831537,"owners_count":25357882,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-12T02:00:09.324Z","response_time":60,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["hmm","hmm-model","hmm-viterbi-algorithm","sequence-alignment","sequence-to-sequence"],"created_at":"2025-01-06T16:54:05.792Z","updated_at":"2025-09-12T15:32:07.938Z","avatar_url":"https://github.com/fperraudeau.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# gphmm\nGeneralized Pair Hidden Markov Model (GPHMM)\n\n[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)\n[![Travis-CI Build Status](https://travis-ci.org/fperraudeau/gphmm.svg?branch=master)](https://travis-ci.org/fperraudeau/gphmm)\n\nThis package trains a GPHMM and computes GPHMM probabilities.\n\nThe model will is described in details in https://www.biorxiv.org/content/early/2017/12/04/228619.\n\n## Installation\n\n```{r}\ninstall.packages('gphmm')\n```\n\nNote that `gphmm` package need compilation of C++ code.\n\nInstalling from CRAN is recommended. However, if you want to install the version from GitHub, you can do so with the following lines of code\n\n```{r}\nlibrary(devtools)\ninstall_github(\"fperraudeau/gphmm\")\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffperraudeau%2Fgphmm","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffperraudeau%2Fgphmm","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffperraudeau%2Fgphmm/lists"}