{"id":24790114,"url":"https://github.com/frbcesab/agrite","last_synced_at":"2025-03-24T13:14:09.432Z","repository":{"id":104708111,"uuid":"550858625","full_name":"FRBCesab/agrite","owner":"FRBCesab","description":":basket: Retrieve DOI from a full citation","archived":false,"fork":false,"pushed_at":"2023-03-02T08:52:52.000Z","size":11065,"stargazers_count":3,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-01-29T18:14:40.001Z","etag":null,"topics":["bibtex","crossref","doi","r","web-of-science"],"latest_commit_sha":null,"homepage":"https://frbcesab.github.io/agrite","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/FRBCesab.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2022-10-13T12:50:15.000Z","updated_at":"2024-09-29T12:34:37.000Z","dependencies_parsed_at":null,"dependency_job_id":"ab971165-344d-4cfc-a1bc-7ca90b35cb18","html_url":"https://github.com/FRBCesab/agrite","commit_stats":{"total_commits":22,"total_committers":1,"mean_commits":22.0,"dds":0.0,"last_synced_commit":"eb7ae686626ada747b192cfdd1f47255de58beba"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FRBCesab%2Fagrite","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FRBCesab%2Fagrite/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FRBCesab%2Fagrite/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FRBCesab%2Fagrite/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/FRBCesab","download_url":"https://codeload.github.com/FRBCesab/agrite/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245276180,"owners_count":20588894,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bibtex","crossref","doi","r","web-of-science"],"created_at":"2025-01-29T18:14:44.432Z","updated_at":"2025-03-24T13:14:09.411Z","avatar_url":"https://github.com/FRBCesab.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n\n```{r, include = FALSE}\nknitr::opts_chunk$set(collapse  = TRUE,\n                      comment   = \"#\u003e\",\n                      fig.path  = \"man/figures/\",\n                      out.width = \"100%\")\n```\n\n\n\n# Agri-TE\n\n\n\u003c!-- badges: start --\u003e\n[![R CMD Check](https://github.com/frbcesab/agrite/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/frbcesab/agrite/actions/workflows/R-CMD-check.yaml)\n[![License: GPL (\u003e= 2)](https://img.shields.io/badge/License-GPL%20%28%3E%3D%202%29-blue.svg)](https://choosealicense.com/licenses/gpl-2.0/)\n[![Website](https://github.com/frbcesab/agrite/actions/workflows/pkgdown.yaml/badge.svg)](https://github.com/frbcesab/agrite/actions/workflows/pkgdown.yaml)\n[![Dependencies](https://img.shields.io/badge/dependencies-11/66-red?style=flat)](#)\n\u003c!-- badges: end --\u003e\n\n\nResearch Compendium of the \n[FRB-CESAB](https://www.fondationbiodiversite.fr/en/about-the-foundation/le-cesab/) \nresearch group \n[Agri-TE](https://www.fondationbiodiversite.fr/en/the-frb-in-action/programs-and-projects/le-cesab/agri-te/).\n\nThis repository contains different functions to retrieve the DOI, metadata and full text of a raw reference\ncitation using the [Web of Science Lite API](https://developer.clarivate.com/apis/woslite) \n(and the R package [`rwoslite`](https://github.com/frbcesab/rwoslite)) and the \n[CrossRef API](https://www.crossref.org/documentation/retrieve-metadata/rest-api/) \n(and the R package [`rcrossref`](https://cran.r-project.org/package=rcrossref)).\n\n\n\n### Content\n\nThis repository is structured as follow:\n\n- [`data/`](https://github.com/frbcesab/agrite/tree/master/data):\ncontains all raw data required to perform analyses\n\n- [`analyses/`](https://github.com/frbcesab/agrite/tree/master/analyses/):\ncontains R scripts to run each step of the workflow\n\n- [`outputs/`](https://github.com/frbcesab/agrite/tree/master/outputs):\ncontains all the results created during the workflow\n\n- [`R/`](https://github.com/frbcesab/agrite/tree/master/R):\ncontains R functions developed especially for this project\n\n- [`man/`](https://github.com/frbcesab/agrite/tree/master/man):\ncontains help files of R functions\n\n- [`DESCRIPTION`](https://github.com/frbcesab/agrite/tree/master/DESCRIPTION):\ncontains project metadata (author, date, dependencies, etc.)\n\n- [`make.R`](https://github.com/frbcesab/agrite/tree/master/make.R):\nmain R script to run the entire project by calling each R script stored in the `analyses/` folder\n\n\n\n### Usage\n\nClone the repository, open RStudio, create a new project inside this folder \nand open the `make.R`.\n\n\n\n### How to cite\n\nPlease cite this compendium as: \n\n\u003e Casajus N. \u0026 Bellouin D. (2023) agrite: A Toolbox to Retrieve DOI, Metadata, and Full Text from a Raw Citation.\n\n\n\n### Notes\n\n- All required packages, listed in the `DESCRIPTION` file, will be installed (if necessary)\n- All required packages and R functions will be loaded\n- Some analyses listed in the `make.R` might take time\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffrbcesab%2Fagrite","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ffrbcesab%2Fagrite","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ffrbcesab%2Fagrite/lists"}